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OPENSEQ.org

YDII - YDIM
UniProt: P77781 - P76197
Length: 540
Sequences: 1159
Seq/Len: 2.28
I_Prob: 0.00

YDII - Esterase YdiI
Paralog alert: 0.55 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: ENTH PAAI YDII YIGI
YDIM - Inner membrane transport protein YdiM
Paralog alert: 0.90 [within 20: 0.66] - ratio of genomes with paralogs
Cluster includes: AMPG ARAE ARAJ BCR CYNX DGOT DTPA DTPB DTPD EMRB EMRD EMRY ENTS EXUT FSR FUCP GALP GARP GLPT GUDP HCAT HSRA KGTP LACY LPLT MDFA MDTD MDTG MDTH MDTL MDTM MELB MHPT NANT NARK NARU NEPI NUPG PROP RHMT SETA SETB SETC SHIA SOTB TSGA UHPC UHPT UIDB XAPB XYLE YAAU YAGG YAJR YBJJ YCAD YDEE YDFJ YDHC YDHP YDIM YDIN YDJE YDJK YEAN YEBQ YEGT YFCJ YGAY YGCS YHHS YHJE YHJX YICJ YIHN YIHO YIHP YJDL YJHB YJIJ YJJL YNFM YQCE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
103_K 291_T 0.80 0.00
58_S 245_M 0.77 0.00
39_T 337_G 0.76 0.00
98_V 38_Q 0.75 0.00
77_E 260_C 0.72 0.00
86_N 245_M 0.72 0.00
90_V 259_L 0.72 0.00
101_V 57_S 0.71 0.00
93_A 83_M 0.70 0.00
92_S 248_K 0.70 0.00
33_D 364_D 0.69 0.00
60_V 53_I 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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