GREMLIN co-evolution for E. coli genes.
- The E. coli analysis is similar to the PFAM analysis, though we modified alignment generation protocol (HHblits -e 1E-20 -i 8, HHfilter -id 90 -cov 75) to be less diverse. Analysis was restricted to include only the E. coli genes that had at least 1 sequence per length.
- Databases used (HHblits: UniProt_2013_03; HHsearch: pdb70_14Dec13)
- We've recently extended the analysis to predict residue-residue interactions within complexes! These are focused on interactions within E. coli operons.
- NEW (Jan. 2015) We've updated our predictions for ECOLI (and other model organisms) and uploaded the results to our new website.
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