| UniProt: | P77781 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13968 | ||
| Length: | 136 (128) | ||
| Sequences: | 3028 | ||
| Seq/Len: | 23.66 |
| YDII
Paralog alert: 0.55 [within 20: 0.05] - ratio of genomes with paralogs Cluster includes: ENTH PAAI YDII YIGI |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 83_L | 111_H | 3.337 | 1.00 | |
| 29_E | 39_T | 3.069 | 1.00 | |
| 39_T | 97_R | 2.938 | 1.00 | |
| 37_E | 101_V | 2.621 | 1.00 | |
| 101_V | 119_F | 2.517 | 1.00 | |
| 27_R | 39_T | 2.49 | 1.00 | |
| 30_H | 35_T | 2.463 | 1.00 | |
| 38_A | 65_I | 2.456 | 1.00 | |
| 30_H | 37_E | 2.361 | 1.00 | |
| 40_M | 57_A | 2.149 | 1.00 | |
| 70_G | 112_Q | 2.027 | 1.00 | |
| 32_G | 35_T | 2.025 | 1.00 | |
| 117_E | 125_L | 1.964 | 1.00 | |
| 62_A | 129_S | 1.94 | 1.00 | |
| 35_T | 103_K | 1.922 | 1.00 | |
| 59_V | 85_I | 1.918 | 1.00 | |
| 91_R | 124_R | 1.843 | 1.00 | |
| 66_G | 116_I | 1.791 | 1.00 | |
| 65_I | 100_G | 1.789 | 1.00 | |
| 35_T | 101_V | 1.763 | 1.00 | |
| 59_V | 89_H | 1.734 | 1.00 | |
| 84_E | 88_N | 1.694 | 1.00 | |
| 120_D | 124_R | 1.681 | 1.00 | |
| 39_T | 99_R | 1.634 | 1.00 | |
| 66_G | 131_L | 1.617 | 1.00 | |
| 59_V | 87_A | 1.601 | 1.00 | |
| 100_G | 116_I | 1.55 | 1.00 | |
| 37_E | 99_R | 1.503 | 1.00 | |
| 103_K | 117_E | 1.495 | 1.00 | |
| 103_K | 115_Q | 1.494 | 1.00 | |
| 115_Q | 128_S | 1.469 | 1.00 | |
| 62_A | 118_I | 1.438 | 1.00 | |
| 41_P | 97_R | 1.432 | 1.00 | |
| 42_V | 53_L | 1.403 | 0.99 | |
| 106_H | 111_H | 1.403 | 0.99 | |
| 119_F | 123_G | 1.394 | 0.99 | |
| 104_P | 107_L | 1.381 | 0.99 | |
| 58_S | 127_C | 1.374 | 0.99 | |
| 62_A | 116_I | 1.371 | 0.99 | |
| 93_A | 126_C | 1.366 | 0.99 | |
| 105_L | 115_Q | 1.357 | 0.99 | |
| 20_M | 57_A | 1.353 | 0.99 | |
| 87_A | 127_C | 1.323 | 0.99 | |
| 23_F | 45_R | 1.273 | 0.99 | |
| 34_D | 72_L | 1.234 | 0.98 | |
| 63_E | 82_G | 1.23 | 0.98 | |
| 56_G | 60_V | 1.226 | 0.98 | |
| 115_Q | 130_R | 1.21 | 0.98 | |
| 117_E | 128_S | 1.19 | 0.98 | |
| 53_L | 98_V | 1.187 | 0.98 | |
| 43_D | 46_T | 1.171 | 0.98 | |
| 27_R | 41_P | 1.165 | 0.97 | |
| 73_C | 107_L | 1.152 | 0.97 | |
| 105_L | 128_S | 1.144 | 0.97 | |
| 29_E | 37_E | 1.142 | 0.97 | |
| 58_S | 118_I | 1.128 | 0.97 | |
| 58_S | 126_C | 1.12 | 0.96 | |
| 88_N | 132_T | 1.067 | 0.95 | |
| 70_G | 133_T | 1.066 | 0.95 | |
| 84_E | 130_R | 1.056 | 0.95 | |
| 20_M | 60_V | 1.055 | 0.95 | |
| 10_E | 14_A | 1.048 | 0.94 | |
| 91_R | 106_H | 1.042 | 0.94 | |
| 93_A | 98_V | 1.041 | 0.94 | |
| 52_L | 81_V | 1.031 | 0.94 | |
| 90_V | 128_S | 1.026 | 0.94 | |
| 104_P | 114_W | 1.008 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1vh5A | 2 | 1 | 99.9 | 0.252 | Contact Map | 0.85 |
| 1vh9A | 2 | 1 | 99.9 | 0.254 | Contact Map | 0.735 |
| 3lmbA | 2 | 0.9853 | 99.9 | 0.259 | Contact Map | 0.689 |
| 1yocA | 2 | 0.9926 | 99.9 | 0.274 | Contact Map | 0.637 |
| 1sh8A | 2 | 0.9706 | 99.9 | 0.277 | Contact Map | 0.724 |
| 1o0iA | 2 | 1 | 99.9 | 0.279 | Contact Map | 0.795 |
| 1t82A | 4 | 0.9779 | 99.9 | 0.284 | Contact Map | 0.649 |
| 3e8pA | 4 | 1 | 99.9 | 0.289 | Contact Map | 0.802 |
| 3gekA | 4 | 0.875 | 99.9 | 0.29 | Contact Map | 0.846 |
| 3hduA | 3 | 1 | 99.9 | 0.3 | Contact Map | 0.751 |
Sequence Conservation (Image Generated using WebLogo v3)