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OPENSEQ.org

FLGF - YAJR
UniProt: P75938 - P77726
Length: 705
Sequences: 383
Seq/Len: 0.61
I_Prob: 0.00

FLGF - Flagellar basal-body rod protein FlgF
Paralog alert: 0.88 [within 20: 0.56] - ratio of genomes with paralogs
Cluster includes: FLGE FLGF FLGG
YAJR - Inner membrane transport protein YajR
Paralog alert: 0.90 [within 20: 0.60] - ratio of genomes with paralogs
Cluster includes: AMPG ARAE ARAJ BCR CYNX DGOT DTPA DTPB DTPD EMRB EMRD EMRY ENTS EXUT FSR FUCP GALP GARP GLPT GUDP HCAT HSRA KGTP LACY LPLT MDFA MDTD MDTG MDTH MDTL MDTM MELB MHPT NANT NARK NARU NEPI NUPG PROP RHMT SETA SETB SETC SHIA SOTB TSGA UHPC UHPT UIDB XAPB XYLE YAAU YAGG YAJR YBJJ YCAD YDEE YDFJ YDHC YDHP YDIM YDIN YDJE YDJK YEAN YEBQ YEGT YFCJ YGAY YGCS YHHS YHJE YHJX YICJ YIHN YIHO YIHP YJDL YJHB YJIJ YJJL YNFM YQCE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
201_V 255_A 0.94 0.00
161_L 311_L 0.88 0.00
204_G 289_V 0.85 0.00
235_S 311_L 0.85 0.00
223_S 285_V 0.83 0.00
108_D 177_T 0.83 0.00
110_T 205_F 0.81 0.00
201_V 97_L 0.81 0.00
90_V 90_A 0.81 0.00
235_S 325_S 0.80 0.00
179_F 181_L 0.80 0.00
135_I 241_D 0.80 0.00
136_T 356_S 0.79 0.00
83_Q 158_I 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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