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OPENSEQ.org

DSBE - NARP
UniProt: P0AA86 - P31802
Length: 400
Sequences: 247
Seq/Len: 0.65
I_Prob: 0.00

DSBE - Thiol:disulfide interchange protein DsbE
Paralog alert: 0.18 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: AHPC BCP DSBE TPX
NARP - Nitrate/nitrite response regulator protein NarP
Paralog alert: 0.94 [within 20: 0.58] - ratio of genomes with paralogs
Cluster includes: ARCA BAER BASR BGLJ CPXR CREB CSGD CUSR DCUR DPIA EVGA FIMZ KDPE NARL NARP OMPR PHOB PHOP QSEB RCSB RSTA TORR UHPA UVRY YEDW YGEK YHJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
126_S 40_D 1.26 0.00
11_I 189_I 1.12 0.00
155_I 101_A 1.06 0.00
120_G 192_L 1.02 0.00
150_D 60_L 1.00 0.00
65_L 72_N 0.98 0.00
149_I 117_L 0.96 0.00
127_L 40_D 0.96 0.00
118_E 140_E 0.96 0.00
118_E 85_I 0.95 0.00
155_I 108_L 0.94 0.00
147_F 45_I 0.92 0.00
152_N 74_L 0.91 0.00
76_W 87_T 0.89 0.00
72_L 177_V 0.88 0.00
8_I 83_I 0.88 0.00
15_A 60_L 0.88 0.00
19_A 13_D 0.87 0.00
73_L 135_N 0.85 0.00
60_Y 107_L 0.85 0.00
149_I 36_A 0.84 0.00
90_L 76_R 0.84 0.00
148_L 117_L 0.83 0.00
92_Q 57_L 0.82 0.00
97_G 87_T 0.82 0.00
159_H 185_V 0.82 0.00
117_K 44_A 0.81 0.00
147_F 155_T 0.81 0.00
111_K 68_L 0.79 0.00
147_F 95_V 0.79 0.00
58_Q 169_L 0.78 0.00
73_L 107_L 0.78 0.00
166_R 123_G 0.77 0.00
16_I 148_E 0.77 0.00
78_T 50_R 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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