| UniProt: | P0AF28 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10643 | ||
| Length: | 216 (208) | ||
| Sequences: | 29664 | ||
| Seq/Len: | 142.62 |
| NARL
Paralog alert: 0.94 [within 20: 0.57] - ratio of genomes with paralogs Cluster includes: ARCA BAER BASR BGLJ CPXR CREB CSGD CUSR DCUR DPIA EVGA FIMZ KDPE NARL NARP OMPR PHOB PHOP QSEB RCSB RSTA TORR UHPA UVRY YEDW YGEK YHJB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 19_R | 37_E | 3.584 | 1.00 | |
| 19_R | 39_S | 2.904 | 1.00 | |
| 42_E | 64_G | 2.586 | 1.00 | |
| 23_K | 37_E | 2.583 | 1.00 | |
| 159_R | 162_D | 2.534 | 1.00 | |
| 185_S | 188_K | 2.476 | 1.00 | |
| 40_N | 64_G | 2.439 | 1.00 | |
| 92_E | 112_E | 2.409 | 1.00 | |
| 12_I | 44_G | 2.407 | 1.00 | |
| 23_K | 27_S | 2.342 | 1.00 | |
| 65_M | 73_K | 2.341 | 1.00 | |
| 160_E | 197_K | 2.318 | 1.00 | |
| 173_N | 188_K | 2.299 | 1.00 | |
| 36_G | 53_P | 2.279 | 1.00 | |
| 41_G | 65_M | 2.254 | 1.00 | |
| 95_V | 115_D | 2.175 | 1.00 | |
| 40_N | 43_Q | 2.107 | 1.00 | |
| 25_L | 113_P | 2.073 | 1.00 | |
| 49_E | 77_K | 2.042 | 1.00 | |
| 66_N | 69_E | 1.979 | 1.00 | |
| 45_I | 73_K | 1.976 | 1.00 | |
| 190_H | 193_H | 1.892 | 1.00 | |
| 165_K | 169_Q | 1.859 | 1.00 | |
| 39_S | 43_Q | 1.802 | 1.00 | |
| 38_A | 47_L | 1.785 | 1.00 | |
| 84_V | 123_A | 1.784 | 1.00 | |
| 71_L | 83_I | 1.771 | 1.00 | |
| 55_L | 120_L | 1.741 | 1.00 | |
| 100_K | 121_H | 1.734 | 1.00 | |
| 85_V | 98_A | 1.698 | 1.00 | |
| 60_L | 85_V | 1.683 | 1.00 | |
| 26_I | 120_L | 1.667 | 1.00 | |
| 172_P | 175_M | 1.646 | 1.00 | |
| 104_D | 126_G | 1.639 | 1.00 | |
| 61_N | 89_S | 1.633 | 1.00 | |
| 58_L | 70_T | 1.63 | 1.00 | |
| 29_A | 117_L | 1.615 | 1.00 | |
| 8_T | 36_G | 1.609 | 1.00 | |
| 58_L | 71_L | 1.595 | 1.00 | |
| 71_L | 85_V | 1.571 | 1.00 | |
| 73_K | 76_E | 1.544 | 1.00 | |
| 36_G | 47_L | 1.543 | 1.00 | |
| 166_L | 176_I | 1.539 | 1.00 | |
| 85_V | 103_A | 1.521 | 1.00 | |
| 36_G | 51_L | 1.496 | 1.00 | |
| 12_I | 62_M | 1.471 | 1.00 | |
| 89_S | 94_D | 1.467 | 1.00 | |
| 56_I | 81_G | 1.461 | 1.00 | |
| 200_L | 209_W | 1.454 | 1.00 | |
| 65_M | 69_E | 1.454 | 1.00 | |
| 10_L | 38_A | 1.451 | 1.00 | |
| 13_D | 19_R | 1.424 | 1.00 | |
| 31_D | 121_H | 1.421 | 1.00 | |
| 45_I | 70_T | 1.413 | 1.00 | |
| 41_G | 70_T | 1.407 | 0.99 | |
| 139_A | 143_R | 1.375 | 0.99 | |
| 68_L | 101_R | 1.374 | 0.99 | |
| 8_T | 34_V | 1.363 | 0.99 | |
| 171_L | 179_R | 1.36 | 0.99 | |
| 75_R | 104_D | 1.355 | 0.99 | |
| 166_L | 179_R | 1.347 | 0.99 | |
| 144_A | 168_A | 1.315 | 0.99 | |
| 60_L | 68_L | 1.302 | 0.99 | |
| 46_E | 50_S | 1.292 | 0.99 | |
| 42_E | 65_M | 1.285 | 0.99 | |
| 69_E | 72_D | 1.276 | 0.99 | |
| 47_L | 51_L | 1.275 | 0.99 | |
| 8_T | 33_T | 1.249 | 0.99 | |
| 186_T | 190_H | 1.243 | 0.98 | |
| 73_K | 77_K | 1.235 | 0.98 | |
| 164_L | 206_A | 1.233 | 0.98 | |
| 105_G | 119_A | 1.229 | 0.98 | |
| 157_T | 197_K | 1.229 | 0.98 | |
| 45_I | 65_M | 1.217 | 0.98 | |
| 191_V | 195_L | 1.207 | 0.98 | |
| 189_V | 192_K | 1.205 | 0.98 | |
| 47_L | 50_S | 1.2 | 0.98 | |
| 29_A | 121_H | 1.177 | 0.98 | |
| 42_E | 46_E | 1.177 | 0.98 | |
| 72_D | 97_T | 1.171 | 0.98 | |
| 48_A | 74_L | 1.171 | 0.98 | |
| 91_H | 94_D | 1.168 | 0.97 | |
| 16_P | 39_S | 1.167 | 0.97 | |
| 38_A | 44_G | 1.152 | 0.97 | |
| 55_L | 124_A | 1.142 | 0.97 | |
| 14_D | 59_D | 1.133 | 0.97 | |
| 123_A | 126_G | 1.117 | 0.96 | |
| 209_W | 213_E | 1.112 | 0.96 | |
| 93_E | 97_T | 1.109 | 0.96 | |
| 43_Q | 46_E | 1.102 | 0.96 | |
| 22_V | 86_F | 1.097 | 0.96 | |
| 174_K | 178_R | 1.083 | 0.96 | |
| 62_M | 70_T | 1.072 | 0.95 | |
| 44_G | 48_A | 1.062 | 0.95 | |
| 68_L | 97_T | 1.056 | 0.95 | |
| 96_V | 114_E | 1.048 | 0.94 | |
| 12_I | 56_I | 1.043 | 0.94 | |
| 43_Q | 47_L | 1.041 | 0.94 | |
| 173_N | 177_A | 1.041 | 0.94 | |
| 185_S | 189_V | 1.037 | 0.94 | |
| 10_L | 44_G | 1.032 | 0.94 | |
| 174_K | 184_E | 1.027 | 0.94 | |
| 162_D | 165_K | 1.025 | 0.93 | |
| 22_V | 116_L | 1.024 | 0.93 | |
| 61_N | 88_V | 1.016 | 0.93 | |
| 166_L | 171_L | 1.015 | 0.93 | |
| 92_E | 96_V | 1.015 | 0.93 | |
| 56_I | 74_L | 1.013 | 0.93 | |
| 47_L | 53_P | 1.011 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3c3wA | 2 | 0.9722 | 100 | 0.105 | Contact Map | 0.578 |
| 1a04A | 2 | 0.9954 | 100 | 0.107 | Contact Map | 0.67 |
| 4gvpA | 4 | 0.9583 | 100 | 0.108 | Contact Map | 0.778 |
| 4hyeA | 2 | 0.9491 | 100 | 0.127 | Contact Map | 0.811 |
| 3kloA | 4 | 0.9954 | 100 | 0.138 | Contact Map | 0.447 |
| 1yioA | 1 | 0.9398 | 100 | 0.175 | Contact Map | 0.686 |
| 1ys7A | 2 | 0.9907 | 100 | 0.218 | Contact Map | 0.753 |
| 3q9sA | 1 | 0.9676 | 100 | 0.223 | Contact Map | 0.671 |
| 4b09A | 12 | 0.9861 | 100 | 0.235 | Contact Map | 0.658 |
| 1kgsA | 1 | 0.9722 | 100 | 0.252 | Contact Map | 0.681 |
Sequence Conservation (Image Generated using WebLogo v3)