| UniProt: | P0AA16 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10672 | ||
| Length: | 239 (229) | ||
| Sequences: | 27431 | ||
| Seq/Len: | 119.79 |
| OMPR
Paralog alert: 0.93 [within 20: 0.54] - ratio of genomes with paralogs Cluster includes: ARCA BAER BASR BGLJ CPXR CREB CSGD CUSR DCUR DPIA EVGA FIMZ KDPE NARL NARP OMPR PHOB PHOP QSEB RCSB RSTA TORR UHPA UVRY YEDW YGEK YHJB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 17_R | 33_S | 3.537 | 1.00 | |
| 17_R | 35_A | 2.797 | 1.00 | |
| 38_E | 60_G | 2.565 | 1.00 | |
| 21_E | 33_S | 2.553 | 1.00 | |
| 10_V | 40_M | 2.472 | 1.00 | |
| 36_N | 60_G | 2.467 | 1.00 | |
| 164_G | 167_A | 2.374 | 1.00 | |
| 182_R | 202_D | 2.372 | 1.00 | |
| 32_R | 49_F | 2.328 | 1.00 | |
| 199_R | 202_D | 2.314 | 1.00 | |
| 61_E | 69_R | 2.306 | 1.00 | |
| 165_E | 211_M | 2.294 | 1.00 | |
| 88_E | 108_N | 2.289 | 1.00 | |
| 21_E | 25_T | 2.274 | 1.00 | |
| 37_A | 61_E | 2.148 | 1.00 | |
| 36_N | 39_Q | 2.135 | 1.00 | |
| 91_R | 111_E | 2.12 | 1.00 | |
| 142_K | 155_E | 1.989 | 1.00 | |
| 23_Y | 109_P | 1.965 | 1.00 | |
| 6_K | 30_Q | 1.962 | 1.00 | |
| 62_D | 65_S | 1.926 | 1.00 | |
| 41_D | 69_R | 1.904 | 1.00 | |
| 139_A | 144_K | 1.898 | 1.00 | |
| 151_E | 158_P | 1.859 | 1.00 | |
| 223_Q | 233_V | 1.849 | 1.00 | |
| 170_K | 174_S | 1.835 | 1.00 | |
| 35_A | 39_Q | 1.788 | 1.00 | |
| 51_L | 116_I | 1.787 | 1.00 | |
| 34_V | 43_L | 1.774 | 1.00 | |
| 204_Q | 207_R | 1.756 | 1.00 | |
| 81_M | 94_G | 1.747 | 1.00 | |
| 145_L | 173_V | 1.736 | 1.00 | |
| 6_K | 32_R | 1.736 | 1.00 | |
| 223_Q | 231_V | 1.735 | 1.00 | |
| 80_I | 119_V | 1.719 | 1.00 | |
| 67_C | 79_I | 1.708 | 1.00 | |
| 96_E | 117_R | 1.701 | 1.00 | |
| 24_L | 116_I | 1.683 | 1.00 | |
| 56_L | 81_M | 1.662 | 1.00 | |
| 54_L | 66_I | 1.661 | 1.00 | |
| 100_D | 122_R | 1.657 | 1.00 | |
| 171_A | 185_L | 1.644 | 1.00 | |
| 45_T | 73_Q | 1.639 | 1.00 | |
| 54_L | 67_C | 1.614 | 1.00 | |
| 57_M | 85_K | 1.602 | 1.00 | |
| 175_H | 179_P | 1.601 | 1.00 | |
| 175_H | 178_E | 1.579 | 1.00 | |
| 144_K | 153_F | 1.579 | 1.00 | |
| 8_L | 34_V | 1.548 | 1.00 | |
| 67_C | 81_M | 1.529 | 1.00 | |
| 69_R | 72_S | 1.523 | 1.00 | |
| 171_A | 188_L | 1.518 | 1.00 | |
| 27_Q | 113_L | 1.497 | 1.00 | |
| 10_V | 58_L | 1.496 | 1.00 | |
| 85_K | 90_D | 1.464 | 1.00 | |
| 52_M | 77_M | 1.46 | 1.00 | |
| 181_S | 184_K | 1.457 | 1.00 | |
| 81_M | 99_A | 1.445 | 1.00 | |
| 11_D | 17_R | 1.428 | 1.00 | |
| 37_A | 66_I | 1.426 | 1.00 | |
| 41_D | 66_I | 1.4 | 0.99 | |
| 64_L | 97_I | 1.399 | 0.99 | |
| 61_E | 65_S | 1.393 | 0.99 | |
| 32_R | 43_L | 1.357 | 0.99 | |
| 180_L | 188_L | 1.344 | 0.99 | |
| 146_N | 149_T | 1.313 | 0.99 | |
| 71_R | 100_D | 1.31 | 0.99 | |
| 101_D | 115_R | 1.309 | 0.99 | |
| 65_S | 68_R | 1.3 | 0.99 | |
| 176_P | 180_L | 1.3 | 0.99 | |
| 42_R | 46_R | 1.294 | 0.99 | |
| 205_I | 209_R | 1.279 | 0.99 | |
| 56_L | 64_L | 1.27 | 0.99 | |
| 38_E | 61_E | 1.247 | 0.99 | |
| 43_L | 46_R | 1.227 | 0.98 | |
| 43_L | 47_E | 1.227 | 0.98 | |
| 150_R | 167_A | 1.219 | 0.98 | |
| 171_A | 180_L | 1.216 | 0.98 | |
| 29_F | 117_R | 1.216 | 0.98 | |
| 225_V | 231_V | 1.215 | 0.98 | |
| 51_L | 120_L | 1.212 | 0.98 | |
| 38_E | 42_R | 1.186 | 0.98 | |
| 119_V | 122_R | 1.178 | 0.98 | |
| 41_D | 61_E | 1.17 | 0.97 | |
| 28_G | 117_R | 1.163 | 0.97 | |
| 87_E | 90_D | 1.163 | 0.97 | |
| 200_S | 204_Q | 1.162 | 0.97 | |
| 145_L | 166_F | 1.157 | 0.97 | |
| 69_R | 73_Q | 1.156 | 0.97 | |
| 34_V | 40_M | 1.156 | 0.97 | |
| 147_L | 170_K | 1.15 | 0.97 | |
| 178_E | 184_K | 1.143 | 0.97 | |
| 44_L | 70_L | 1.14 | 0.97 | |
| 68_R | 93_V | 1.126 | 0.97 | |
| 150_R | 228_L | 1.12 | 0.96 | |
| 162_T | 211_M | 1.117 | 0.96 | |
| 153_F | 158_P | 1.116 | 0.96 | |
| 39_Q | 42_R | 1.115 | 0.96 | |
| 203_V | 206_S | 1.105 | 0.96 | |
| 7_I | 29_F | 1.099 | 0.96 | |
| 164_G | 190_R | 1.099 | 0.96 | |
| 14_M | 35_A | 1.096 | 0.96 | |
| 137_V | 144_K | 1.084 | 0.96 | |
| 183_D | 187_N | 1.075 | 0.95 | |
| 10_V | 52_M | 1.075 | 0.95 | |
| 20_L | 82_V | 1.074 | 0.95 | |
| 12_D | 55_D | 1.073 | 0.95 | |
| 32_R | 47_E | 1.062 | 0.95 | |
| 40_M | 44_L | 1.062 | 0.95 | |
| 92_I | 110_R | 1.06 | 0.95 | |
| 57_M | 84_A | 1.058 | 0.95 | |
| 8_L | 40_M | 1.057 | 0.95 | |
| 64_L | 93_V | 1.054 | 0.95 | |
| 183_D | 198_E | 1.053 | 0.95 | |
| 89_V | 93_V | 1.05 | 0.94 | |
| 148_G | 178_E | 1.049 | 0.94 | |
| 9_V | 31_V | 1.043 | 0.94 | |
| 27_Q | 117_R | 1.031 | 0.94 | |
| 11_D | 58_L | 1.024 | 0.93 | |
| 58_L | 66_I | 1.024 | 0.93 | |
| 39_Q | 43_L | 1.022 | 0.93 | |
| 8_L | 49_F | 1.022 | 0.93 | |
| 20_L | 112_L | 1.019 | 0.93 | |
| 118_A | 123_Q | 1.015 | 0.93 | |
| 45_T | 74_S | 1.014 | 0.93 | |
| 140_F | 232_F | 1.008 | 0.93 | |
| 88_E | 92_I | 1.007 | 0.93 | |
| 52_M | 70_L | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1ys7A | 2 | 0.9623 | 100 | 0.127 | Contact Map | 0.763 |
| 2gwrA | 1 | 0.9665 | 100 | 0.132 | Contact Map | 0.68 |
| 3r0jA | 2 | 0.9623 | 100 | 0.137 | Contact Map | 0.676 |
| 2oqrA | 1 | 0.9623 | 100 | 0.141 | Contact Map | 0.559 |
| 1kgsA | 1 | 0.9414 | 100 | 0.166 | Contact Map | 0.708 |
| 4b09A | 12 | 0.9749 | 100 | 0.172 | Contact Map | 0.672 |
| 2hqrA | 2 | 0.9205 | 100 | 0.181 | Contact Map | 0.666 |
| 1p2fA | 1 | 0.9205 | 100 | 0.183 | Contact Map | 0.738 |
| 3q9sA | 1 | 0.8996 | 100 | 0.198 | Contact Map | 0.676 |
| 3c3wA | 2 | 0.8996 | 100 | 0.293 | Contact Map | 0.633 |
Sequence Conservation (Image Generated using WebLogo v3)