| UniProt: | P38684 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12615 | ||
| Length: | 230 (221) | ||
| Sequences: | 28103 | ||
| Seq/Len: | 127.16 |
| TORR
Paralog alert: 0.94 [within 20: 0.55] - ratio of genomes with paralogs Cluster includes: ARCA BAER BASR BGLJ CPXR CREB CSGD CUSR DCUR DPIA EVGA FIMZ KDPE NARL NARP OMPR PHOB PHOP QSEB RCSB RSTA TORR UHPA UVRY YEDW YGEK YHJB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 15_Q | 31_V | 3.585 | 1.00 | |
| 15_Q | 33_A | 2.801 | 1.00 | |
| 19_Q | 31_V | 2.619 | 1.00 | |
| 36_A | 58_D | 2.615 | 1.00 | |
| 8_V | 38_L | 2.538 | 1.00 | |
| 34_S | 58_D | 2.457 | 1.00 | |
| 197_R | 200_D | 2.377 | 1.00 | |
| 59_E | 67_A | 2.365 | 1.00 | |
| 179_R | 200_D | 2.342 | 1.00 | |
| 161_A | 164_E | 2.319 | 1.00 | |
| 30_S | 47_V | 2.298 | 1.00 | |
| 85_R | 105_E | 2.247 | 1.00 | |
| 19_Q | 23_T | 2.227 | 1.00 | |
| 162_E | 209_K | 2.15 | 1.00 | |
| 88_R | 108_E | 2.132 | 1.00 | |
| 35_G | 59_E | 2.121 | 1.00 | |
| 34_S | 37_G | 2.069 | 1.00 | |
| 39_R | 67_A | 1.994 | 1.00 | |
| 21_Y | 106_L | 1.989 | 1.00 | |
| 4_H | 28_T | 1.968 | 1.00 | |
| 139_G | 152_D | 1.926 | 1.00 | |
| 60_N | 63_M | 1.892 | 1.00 | |
| 216_V | 226_A | 1.88 | 1.00 | |
| 33_A | 37_G | 1.836 | 1.00 | |
| 4_H | 30_S | 1.823 | 1.00 | |
| 167_V | 171_T | 1.806 | 1.00 | |
| 32_T | 41_I | 1.798 | 1.00 | |
| 136_R | 141_C | 1.794 | 1.00 | |
| 78_L | 91_G | 1.782 | 1.00 | |
| 216_V | 224_F | 1.752 | 1.00 | |
| 49_L | 113_V | 1.744 | 1.00 | |
| 22_F | 113_V | 1.726 | 1.00 | |
| 202_L | 205_R | 1.724 | 1.00 | |
| 148_T | 155_P | 1.707 | 1.00 | |
| 54_I | 78_L | 1.703 | 1.00 | |
| 65_T | 76_I | 1.69 | 1.00 | |
| 52_L | 64_L | 1.68 | 1.00 | |
| 77_I | 116_L | 1.657 | 1.00 | |
| 142_L | 170_V | 1.65 | 1.00 | |
| 55_N | 82_R | 1.636 | 1.00 | |
| 168_A | 182_L | 1.595 | 1.00 | |
| 93_E | 114_K | 1.581 | 1.00 | |
| 172_N | 175_E | 1.56 | 1.00 | |
| 6_V | 32_T | 1.558 | 1.00 | |
| 168_A | 185_M | 1.555 | 1.00 | |
| 52_L | 65_T | 1.549 | 1.00 | |
| 97_D | 119_R | 1.543 | 1.00 | |
| 141_C | 150_E | 1.543 | 1.00 | |
| 65_T | 78_L | 1.54 | 1.00 | |
| 8_V | 56_L | 1.528 | 1.00 | |
| 82_R | 87_D | 1.526 | 1.00 | |
| 67_A | 70_E | 1.506 | 1.00 | |
| 78_L | 96_A | 1.472 | 1.00 | |
| 98_D | 112_R | 1.461 | 1.00 | |
| 50_I | 74_V | 1.438 | 1.00 | |
| 178_S | 181_R | 1.436 | 1.00 | |
| 25_E | 110_V | 1.414 | 1.00 | |
| 9_E | 15_Q | 1.409 | 1.00 | |
| 69_R | 97_D | 1.401 | 0.99 | |
| 59_E | 63_M | 1.393 | 0.99 | |
| 30_S | 41_I | 1.391 | 0.99 | |
| 35_G | 64_L | 1.389 | 0.99 | |
| 39_R | 64_L | 1.356 | 0.99 | |
| 177_L | 185_M | 1.335 | 0.99 | |
| 63_M | 66_R | 1.301 | 0.99 | |
| 173_P | 177_L | 1.3 | 0.99 | |
| 62_L | 94_M | 1.295 | 0.99 | |
| 203_I | 207_R | 1.29 | 0.99 | |
| 36_A | 59_E | 1.279 | 0.99 | |
| 41_I | 45_Q | 1.268 | 0.99 | |
| 40_E | 44_N | 1.263 | 0.99 | |
| 143_N | 146_R | 1.26 | 0.99 | |
| 41_I | 44_N | 1.252 | 0.99 | |
| 218_Q | 224_F | 1.249 | 0.99 | |
| 54_I | 62_L | 1.244 | 0.98 | |
| 30_S | 45_Q | 1.219 | 0.98 | |
| 168_A | 177_L | 1.219 | 0.98 | |
| 27_Y | 114_K | 1.216 | 0.98 | |
| 43_Q | 71_R | 1.198 | 0.98 | |
| 147_H | 164_E | 1.194 | 0.98 | |
| 36_A | 40_E | 1.184 | 0.98 | |
| 26_G | 114_K | 1.172 | 0.98 | |
| 42_M | 68_L | 1.159 | 0.97 | |
| 32_T | 38_L | 1.154 | 0.97 | |
| 147_H | 221_E | 1.152 | 0.97 | |
| 39_R | 59_E | 1.151 | 0.97 | |
| 84_D | 87_D | 1.148 | 0.97 | |
| 66_R | 90_V | 1.146 | 0.97 | |
| 116_L | 119_R | 1.142 | 0.97 | |
| 144_V | 167_V | 1.135 | 0.97 | |
| 201_V | 204_R | 1.133 | 0.97 | |
| 37_G | 40_E | 1.132 | 0.97 | |
| 12_P | 33_A | 1.13 | 0.97 | |
| 49_L | 117_L | 1.128 | 0.97 | |
| 55_N | 81_G | 1.105 | 0.96 | |
| 198_T | 202_L | 1.103 | 0.96 | |
| 134_C | 141_C | 1.1 | 0.96 | |
| 10_D | 53_D | 1.097 | 0.96 | |
| 180_E | 196_L | 1.097 | 0.96 | |
| 18_L | 79_V | 1.093 | 0.96 | |
| 175_E | 181_R | 1.092 | 0.96 | |
| 150_E | 155_P | 1.083 | 0.96 | |
| 5_I | 27_Y | 1.082 | 0.96 | |
| 8_V | 50_I | 1.082 | 0.96 | |
| 86_I | 90_V | 1.068 | 0.95 | |
| 6_V | 38_L | 1.063 | 0.95 | |
| 142_L | 163_Y | 1.058 | 0.95 | |
| 115_N | 120_I | 1.044 | 0.94 | |
| 6_V | 47_V | 1.042 | 0.94 | |
| 62_L | 90_V | 1.042 | 0.94 | |
| 85_R | 89_I | 1.028 | 0.94 | |
| 7_I | 29_V | 1.026 | 0.94 | |
| 89_I | 107_R | 1.025 | 0.93 | |
| 168_A | 172_N | 1.024 | 0.93 | |
| 38_L | 42_M | 1.023 | 0.93 | |
| 145_S | 175_E | 1.022 | 0.93 | |
| 180_E | 184_R | 1.022 | 0.93 | |
| 37_G | 41_I | 1.013 | 0.93 | |
| 137_F | 225_L | 1.004 | 0.93 | |
| 56_L | 64_L | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2gwrA | 1 | 0.9652 | 100 | 0.124 | Contact Map | 0.671 |
| 1ys7A | 2 | 0.9696 | 100 | 0.125 | Contact Map | 0.774 |
| 3r0jA | 2 | 0.9783 | 100 | 0.125 | Contact Map | 0.68 |
| 2oqrA | 1 | 0.9696 | 100 | 0.131 | Contact Map | 0.565 |
| 4b09A | 12 | 0.9739 | 100 | 0.152 | Contact Map | 0.681 |
| 1kgsA | 1 | 0.9565 | 100 | 0.153 | Contact Map | 0.712 |
| 1p2fA | 1 | 0.9304 | 100 | 0.176 | Contact Map | 0.745 |
| 2hqrA | 2 | 0.9261 | 100 | 0.184 | Contact Map | 0.683 |
| 3q9sA | 1 | 0.913 | 100 | 0.212 | Contact Map | 0.685 |
| 4hyeA | 2 | 0.8435 | 100 | 0.285 | Contact Map | 0.803 |
Sequence Conservation (Image Generated using WebLogo v3)