May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LSRA - LSRB
UniProt: P77257 - P76142
Length: 851
Sequences: 2221
Seq/Len: 2.86
I_Prob: 0.00

LSRA - Autoinducer 2 import ATP-binding protein LsrA
Paralog alert: 0.93 [within 20: 0.28] - ratio of genomes with paralogs
Cluster includes: ALSA ARAG GSIA LSRA MGLA MODF RBSA UUP XYLG YBHF YBIT YEJF YHES YJJK YPHE YTFR
LSRB - Autoinducer 2-binding protein LsrB
Paralog alert: 0.78 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: ALSB ARAF ASCG CRA CYTR DGAL EBGR GALR GALS GNTR IDNR LACI LSRB MALI PURR RBSB RBSR TORT TRER XYLF YCJW YPHF YTFQ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
160_R 208_L 0.59 0.00
346_D 79_N 0.57 0.00
26_V 66_T 0.56 0.00
473_V 257_R 0.54 0.00
285_T 184_G 0.54 0.00
352_L 148_V 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1559 seconds.