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OPENSEQ.org

LRHA - NUOM
UniProt: P36771 - P0AFE8
Length: 821
Sequences: 748
Seq/Len: 0.97
I_Prob: 0.00

LRHA - Probable HTH-type transcriptional regulator LrhA
Paralog alert: 0.88 [within 20: 0.48] - ratio of genomes with paralogs
Cluster includes: AAER ABGR ALLS CBL CYNR CYSB DMLR DSDC GCVA HCAR HDFR ICIA ILVY LEUO LRHA LYSR METR NAC NHAR OXYR PERR TDCA TTDR XAPR YAFC YAHB YBDO YBEF YBHD YCAN YCJZ YDCI YDHB YEEY YEIE YFER YFIE YGFI YHAJ YHJC YIAU YIDZ YJIE YNEJ YNFL
NUOM - NADH-quinone oxidoreductase subunit M
Paralog alert: 0.74 [within 20: 0.56] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
48_R 238_V 0.91 0.00
121_V 473_V 0.89 0.00
101_L 330_I 0.79 0.00
77_Y 133_A 0.79 0.00
225_V 470_L 0.77 0.00
42_V 105_S 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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