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OPENSEQ.org

YDJF - YDJG
UniProt: P77721 - P77256
Length: 578
Sequences: 378
Seq/Len: 0.66
I_Prob: 0.00

YDJF - Uncharacterized HTH-type transcriptional regulator YdjF
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
YDJG - Uncharacterized oxidoreductase YdjG
Paralog alert: 0.83 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: DKGA DKGB GPR TAS YAJO YDBC YDHF YDJG YEAE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
236_G 128_D 1.03 0.00
84_A 276_L 1.01 0.00
137_K 126_G 0.95 0.00
209_H 70_Q 0.95 0.00
171_M 207_C 0.91 0.00
94_K 78_E 0.89 0.00
250_L 164_R 0.89 0.00
230_I 208_R 0.89 0.00
248_I 271_I 0.88 0.00
230_I 73_K 0.88 0.00
164_Y 312_A 0.87 0.00
157_T 226_T 0.85 0.00
241_A 270_T 0.84 0.00
103_S 313_D 0.82 0.00
176_L 254_I 0.79 0.00
112_L 316_L 0.78 0.00
52_T 154_L 0.78 0.00
24_N 79_Q 0.78 0.00
84_A 72_L 0.77 0.00
154_G 89_V 0.77 0.00
221_A 84_T 0.76 0.00
138_V 313_D 0.75 0.00
197_I 274_L 0.75 0.00
141_T 127_I 0.75 0.00
210_S 48_C 0.75 0.00
139_V 126_G 0.75 0.00
233_K 307_I 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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