May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
MALG - MALK
UniProt: P68183 - P68187
Length: 667
Sequences: 6224
Seq/Len: 9.96
I_Prob: 1.00
MALG - Maltose transport system permease protein MalG
Paralog alert: 0.95 [within 20: 0.80] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV 		MALK - Maltose/maltodextrin import ATP-binding protein MalK
Paralog alert: 0.82 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfAB:G:FContact Map
3d31AB:CDContact Map
2onkABGF:CHDIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
190_E 47_R 3.00 1.00
205_L 98_F 2.85 1.00
205_L 101_K 2.11 0.99
192_A 98_F 1.95 0.99
193_A 73_A 1.78 0.98
195_D 87_Y 1.76 0.97
194_L 52_L 1.67 0.96
187_S 83_S 1.60 0.95
195_D 99_G 1.40 0.90
187_S 139_R 1.17 0.77
205_L 102_L 1.17 0.77
194_L 79_M 1.12 0.73
194_L 77_V 0.98 0.58
194_L 78_G 0.97 0.57
201_Q 102_L 0.96 0.56
210_L 89_H 0.95 0.55
205_L 90_L 0.93 0.52
197_A 102_L 0.92 0.51
197_A 98_F 0.84 0.40
190_E 53_E 0.84 0.40
195_D 150_A 0.80 0.35
194_L 150_A 0.72 0.27
191_A 81_F 0.69 0.23
196_G 102_L 0.68 0.21
199_P 73_A 0.64 0.18
198_T 74_E 0.61 0.16
196_G 103_A 0.59 0.14
185_D 83_S 0.57 0.12
198_T 73_A 0.56 0.12
206_V 90_L 0.56 0.12
188_L 88_P 0.52 0.09
197_A 90_L 0.52 0.09
198_T 102_L 0.51 0.08
61_L 119_E 0.50 0.08
273_P 13_W 0.50 0.08
230_V 157_L 0.48 0.07
193_A 72_P 0.48 0.07
210_L 88_P 0.48 0.07
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0957 seconds.