May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
NIKA - NIKC
UniProt: P33590 - P0AFA9
Length: 801
Sequences: 5901
Seq/Len: 7.82
I_Prob: 0.00
NIKA - Nickel-binding periplasmic protein
Paralog alert: 0.87 [within 20: 0.29] - ratio of genomes with paralogs
Cluster includes: DDPA DPPA GSIB MPPA NIKA OPPA SAPA SGRR YBAE YEJA YGIS 		NIKC - Nickel transport system permease protein NikC
Paralog alert: 0.90 [within 20: 0.63] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
399_E 235_I 0.85 0.00
222_P 226_V 0.67 0.00
195_N 70_A 0.56 0.00
388_Q 38_A 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1076 seconds.