| UniProt: | P0AGH5 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG20256 | ||
| Length: | 296 (280) | ||
| Sequences: | 6453 | ||
| Seq/Len: | 23.05 |
| SAPC
Paralog alert: 0.77 [within 20: 0.11] - ratio of genomes with paralogs Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 231_I | 247_E | 3.434 | 1.00 | |
| 95_A | 248_W | 3.209 | 1.00 | |
| 116_L | 131_L | 3.136 | 1.00 | |
| 128_S | 178_Y | 2.961 | 1.00 | |
| 123_T | 200_T | 2.865 | 1.00 | |
| 248_W | 276_S | 2.725 | 1.00 | |
| 78_L | 91_L | 2.618 | 1.00 | |
| 188_E | 191_I | 2.616 | 1.00 | |
| 58_F | 61_Y | 2.571 | 1.00 | |
| 81_D | 85_R | 2.442 | 1.00 | |
| 43_C | 95_A | 2.432 | 1.00 | |
| 198_A | 202_N | 2.245 | 1.00 | |
| 50_A | 89_S | 2.139 | 1.00 | |
| 184_E | 189_Y | 2.137 | 1.00 | |
| 118_T | 181_V | 2.126 | 1.00 | |
| 133_H | 136_D | 2.121 | 1.00 | |
| 82_D | 254_D | 2.11 | 1.00 | |
| 76_F | 86_D | 2.108 | 1.00 | |
| 32_G | 279_L | 2.101 | 1.00 | |
| 53_G | 56_Q | 2.073 | 1.00 | |
| 108_A | 166_W | 2.038 | 1.00 | |
| 39_L | 276_S | 2.031 | 1.00 | |
| 201_L | 205_W | 2.027 | 1.00 | |
| 121_G | 181_V | 2.024 | 1.00 | |
| 288_R | 292_I | 2.022 | 1.00 | |
| 78_L | 268_L | 1.915 | 1.00 | |
| 122_A | 200_T | 1.896 | 1.00 | |
| 20_W | 24_Y | 1.855 | 1.00 | |
| 88_L | 92_L | 1.85 | 1.00 | |
| 41_V | 45_F | 1.823 | 1.00 | |
| 45_F | 48_W | 1.818 | 1.00 | |
| 46_G | 93_S | 1.785 | 1.00 | |
| 87_V | 251_M | 1.773 | 1.00 | |
| 35_G | 279_L | 1.756 | 1.00 | |
| 51_P | 89_S | 1.725 | 1.00 | |
| 29_A | 286_G | 1.715 | 1.00 | |
| 68_W | 77_F | 1.71 | 1.00 | |
| 42_L | 92_L | 1.707 | 1.00 | |
| 36_C | 279_L | 1.676 | 1.00 | |
| 184_E | 208_V | 1.673 | 1.00 | |
| 91_L | 272_A | 1.67 | 1.00 | |
| 181_V | 208_V | 1.659 | 1.00 | |
| 180_M | 183_D | 1.654 | 1.00 | |
| 104_V | 162_M | 1.627 | 1.00 | |
| 123_T | 127_R | 1.623 | 1.00 | |
| 173_M | 223_A | 1.59 | 1.00 | |
| 78_L | 88_L | 1.587 | 1.00 | |
| 184_E | 187_K | 1.582 | 1.00 | |
| 119_F | 123_T | 1.547 | 1.00 | |
| 33_L | 283_L | 1.527 | 1.00 | |
| 118_T | 204_L | 1.511 | 1.00 | |
| 199_S | 202_N | 1.498 | 1.00 | |
| 51_P | 88_L | 1.492 | 1.00 | |
| 184_E | 212_I | 1.465 | 1.00 | |
| 130_V | 134_I | 1.454 | 1.00 | |
| 132_N | 174_V | 1.454 | 1.00 | |
| 101_G | 231_I | 1.442 | 1.00 | |
| 32_G | 286_G | 1.439 | 1.00 | |
| 47_G | 96_A | 1.434 | 1.00 | |
| 189_Y | 211_N | 1.427 | 1.00 | |
| 67_S | 75_S | 1.419 | 1.00 | |
| 110_T | 220_I | 1.403 | 0.99 | |
| 124_H | 185_L | 1.4 | 0.99 | |
| 118_T | 209_M | 1.397 | 0.99 | |
| 52_Y | 89_S | 1.39 | 0.99 | |
| 93_S | 96_A | 1.381 | 0.99 | |
| 194_R | 200_T | 1.38 | 0.99 | |
| 183_D | 187_K | 1.372 | 0.99 | |
| 248_W | 272_A | 1.365 | 0.99 | |
| 121_G | 185_L | 1.356 | 0.99 | |
| 126_L | 130_V | 1.34 | 0.99 | |
| 159_S | 163_F | 1.336 | 0.99 | |
| 24_Y | 30_M | 1.334 | 0.99 | |
| 33_L | 37_A | 1.328 | 0.99 | |
| 221_T | 284_G | 1.328 | 0.99 | |
| 129_A | 133_H | 1.325 | 0.99 | |
| 106_T | 220_I | 1.324 | 0.99 | |
| 32_G | 282_L | 1.323 | 0.99 | |
| 64_L | 67_S | 1.317 | 0.99 | |
| 170_L | 174_V | 1.316 | 0.99 | |
| 132_N | 135_L | 1.306 | 0.99 | |
| 66_P | 264_W | 1.3 | 0.99 | |
| 132_N | 136_D | 1.292 | 0.99 | |
| 263_P | 267_M | 1.29 | 0.99 | |
| 35_G | 275_I | 1.284 | 0.99 | |
| 135_L | 174_V | 1.284 | 0.99 | |
| 123_T | 204_L | 1.281 | 0.99 | |
| 202_N | 206_F | 1.277 | 0.99 | |
| 255_A | 266_V | 1.276 | 0.99 | |
| 76_F | 80_T | 1.272 | 0.99 | |
| 122_A | 203_I | 1.263 | 0.99 | |
| 268_L | 271_A | 1.259 | 0.99 | |
| 87_V | 265_T | 1.259 | 0.99 | |
| 31_V | 34_Y | 1.256 | 0.99 | |
| 264_W | 268_L | 1.25 | 0.99 | |
| 77_F | 88_L | 1.25 | 0.99 | |
| 191_I | 194_R | 1.243 | 0.98 | |
| 255_A | 265_T | 1.241 | 0.98 | |
| 267_M | 271_A | 1.239 | 0.98 | |
| 61_Y | 64_L | 1.236 | 0.98 | |
| 120_A | 131_L | 1.227 | 0.98 | |
| 120_A | 132_N | 1.213 | 0.98 | |
| 114_L | 216_L | 1.208 | 0.98 | |
| 36_C | 283_L | 1.206 | 0.98 | |
| 58_F | 76_F | 1.206 | 0.98 | |
| 124_H | 128_S | 1.204 | 0.98 | |
| 165_V | 230_D | 1.203 | 0.98 | |
| 34_Y | 38_G | 1.198 | 0.98 | |
| 181_V | 212_I | 1.174 | 0.98 | |
| 225_S | 277_V | 1.167 | 0.97 | |
| 236_F | 256_L | 1.138 | 0.97 | |
| 157_S | 160_H | 1.134 | 0.97 | |
| 131_L | 174_V | 1.115 | 0.96 | |
| 112_C | 115_V | 1.112 | 0.96 | |
| 193_A | 207_A | 1.1 | 0.96 | |
| 55_D | 246_P | 1.097 | 0.96 | |
| 114_L | 177_I | 1.09 | 0.96 | |
| 135_L | 171_P | 1.089 | 0.96 | |
| 39_L | 275_I | 1.083 | 0.96 | |
| 64_L | 80_T | 1.072 | 0.95 | |
| 105_V | 165_V | 1.07 | 0.95 | |
| 178_Y | 182_H | 1.068 | 0.95 | |
| 27_A | 30_M | 1.067 | 0.95 | |
| 100_G | 104_V | 1.066 | 0.95 | |
| 138_L | 170_L | 1.066 | 0.95 | |
| 105_V | 227_A | 1.053 | 0.95 | |
| 46_G | 49_F | 1.046 | 0.94 | |
| 190_V | 203_I | 1.046 | 0.94 | |
| 42_L | 95_A | 1.037 | 0.94 | |
| 112_C | 170_L | 1.036 | 0.94 | |
| 116_L | 174_V | 1.033 | 0.94 | |
| 32_G | 35_G | 1.032 | 0.94 | |
| 45_F | 49_F | 1.032 | 0.94 | |
| 36_C | 280_V | 1.029 | 0.94 | |
| 235_G | 247_E | 1.024 | 0.93 | |
| 105_V | 166_W | 1.024 | 0.93 | |
| 191_I | 195_L | 1.017 | 0.93 | |
| 37_A | 41_V | 1.01 | 0.93 | |
| 111_I | 115_V | 1.008 | 0.93 | |
| 91_L | 251_M | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3tuiA | 4 | 0.6892 | 99.9 | 0.683 | Contact Map | 0.787 |
| 3d31C | 2 | 0.9122 | 99.9 | 0.699 | Contact Map | 0.559 |
| 3rlfG | 1 | 0.8953 | 99.9 | 0.701 | Contact Map | 0.556 |
| 3rlfF | 1 | 0.9493 | 99.9 | 0.713 | Contact Map | 0.479 |
| 2onkC | 4 | 0.8986 | 99.8 | 0.724 | Contact Map | 0.562 |
| 2fotC | 1 | 0.0912 | 4.1 | 0.971 | Contact Map | 0 |
| 4azxD | 3 | 0.1486 | 3.4 | 0.972 | Contact Map | 0.15 |
| 3j27B | 3 | 0.1486 | 3.4 | 0.973 | Contact Map | 0.593 |
| 2m8rA | 1 | 0.1588 | 2.8 | 0.974 | Contact Map | 0.158 |
| 3hd7B | 2 | 0.1588 | 2.8 | 0.974 | Contact Map | 0.313 |
Sequence Conservation (Image Generated using WebLogo v3)