| UniProt: | P0AFP4 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13262 | ||
| Length: | 269 (233) | ||
| Sequences: | 50994 | ||
| Seq/Len: | 218.86 |
| YBBO
Paralog alert: 0.88 [within 20: 0.45] - ratio of genomes with paralogs Cluster includes: BDCA ENTA FABG FABI FOLM HCAB HDHA IDNO KDUD SRLD UCPA YBBO YCIK YDFG YGCW YGFF YGHA YOHF |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 112_E | 120_F | 3.249 | 1.00 | |
| 112_E | 116_S | 2.933 | 1.00 | |
| 164_Y | 168_A | 2.86 | 1.00 | |
| 69_S | 72_S | 2.744 | 1.00 | |
| 143_M | 170_S | 2.731 | 1.00 | |
| 81_I | 132_A | 2.432 | 1.00 | |
| 140_R | 183_K | 2.432 | 1.00 | |
| 18_V | 90_G | 2.355 | 1.00 | |
| 29_L | 33_L | 2.306 | 1.00 | |
| 74_D | 128_R | 2.236 | 1.00 | |
| 126_T | 173_L | 2.223 | 1.00 | |
| 145_S | 167_E | 2.207 | 1.00 | |
| 134_L | 180_S | 2.189 | 1.00 | |
| 193_R | 221_G | 2.174 | 1.00 | |
| 34_E | 227_D | 2.165 | 1.00 | |
| 49_P | 53_E | 2.145 | 1.00 | |
| 93_N | 143_M | 2.127 | 1.00 | |
| 116_S | 120_F | 2.07 | 1.00 | |
| 34_E | 230_R | 2.003 | 1.00 | |
| 130_L | 177_L | 1.972 | 1.00 | |
| 90_G | 233_F | 1.962 | 1.00 | |
| 77_A | 129_L | 1.929 | 1.00 | |
| 70_P | 108_R | 1.921 | 1.00 | |
| 17_S | 41_H | 1.877 | 1.00 | |
| 45_G | 65_I | 1.872 | 1.00 | |
| 27_I | 192_I | 1.854 | 1.00 | |
| 34_E | 38_Q | 1.849 | 1.00 | |
| 122_A | 166_L | 1.776 | 1.00 | |
| 118_N | 162_S | 1.759 | 1.00 | |
| 15_Q | 40_F | 1.745 | 1.00 | |
| 31_S | 229_V | 1.725 | 1.00 | |
| 79_E | 83_L | 1.719 | 1.00 | |
| 170_S | 186_L | 1.686 | 1.00 | |
| 48_K | 51_D | 1.657 | 1.00 | |
| 24_S | 46_C | 1.651 | 1.00 | |
| 23_C | 44_A | 1.619 | 1.00 | |
| 119_F | 165_A | 1.601 | 1.00 | |
| 38_Q | 230_R | 1.597 | 1.00 | |
| 52_V | 62_G | 1.578 | 1.00 | |
| 33_L | 58_M | 1.573 | 1.00 | |
| 43_L | 80_V | 1.572 | 1.00 | |
| 35_L | 233_F | 1.569 | 1.00 | |
| 45_G | 76_A | 1.56 | 1.00 | |
| 78_D | 82_A | 1.548 | 1.00 | |
| 34_E | 37_R | 1.538 | 1.00 | |
| 115_F | 119_F | 1.53 | 1.00 | |
| 40_F | 90_G | 1.53 | 1.00 | |
| 140_R | 185_S | 1.52 | 1.00 | |
| 29_L | 55_M | 1.516 | 1.00 | |
| 43_L | 84_T | 1.511 | 1.00 | |
| 17_S | 87_C | 1.508 | 1.00 | |
| 61_T | 83_L | 1.5 | 1.00 | |
| 92_F | 144_T | 1.494 | 1.00 | |
| 65_I | 72_S | 1.49 | 1.00 | |
| 108_R | 124_Q | 1.483 | 1.00 | |
| 49_P | 64_L | 1.47 | 1.00 | |
| 75_R | 79_E | 1.47 | 1.00 | |
| 107_S | 110_Q | 1.456 | 1.00 | |
| 74_D | 78_D | 1.445 | 1.00 | |
| 91_I | 125_L | 1.424 | 1.00 | |
| 79_E | 82_A | 1.418 | 1.00 | |
| 18_V | 35_L | 1.407 | 0.99 | |
| 25_S | 195_R | 1.406 | 0.99 | |
| 73_V | 125_L | 1.396 | 0.99 | |
| 70_P | 124_Q | 1.37 | 0.99 | |
| 65_I | 76_A | 1.352 | 0.99 | |
| 30_E | 223_E | 1.327 | 0.99 | |
| 145_S | 186_L | 1.32 | 0.99 | |
| 63_V | 79_E | 1.307 | 0.99 | |
| 70_P | 74_D | 1.306 | 0.99 | |
| 32_A | 44_A | 1.303 | 0.99 | |
| 72_S | 75_R | 1.302 | 0.99 | |
| 93_N | 126_T | 1.291 | 0.99 | |
| 170_S | 184_V | 1.264 | 0.99 | |
| 132_A | 136_H | 1.262 | 0.99 | |
| 120_F | 124_Q | 1.26 | 0.99 | |
| 187_I | 229_V | 1.258 | 0.99 | |
| 30_E | 33_L | 1.257 | 0.99 | |
| 126_T | 141_I | 1.252 | 0.99 | |
| 18_V | 40_F | 1.228 | 0.98 | |
| 35_L | 40_F | 1.224 | 0.98 | |
| 173_L | 184_V | 1.213 | 0.98 | |
| 192_I | 220_L | 1.208 | 0.98 | |
| 88_L | 129_L | 1.192 | 0.98 | |
| 17_S | 43_L | 1.191 | 0.98 | |
| 33_L | 37_R | 1.189 | 0.98 | |
| 34_E | 226_V | 1.189 | 0.98 | |
| 104_S | 134_L | 1.174 | 0.98 | |
| 227_D | 239_K | 1.169 | 0.97 | |
| 41_H | 61_T | 1.163 | 0.97 | |
| 115_F | 120_F | 1.163 | 0.97 | |
| 99_M | 113_Q | 1.154 | 0.97 | |
| 25_S | 51_D | 1.153 | 0.97 | |
| 91_I | 129_L | 1.149 | 0.97 | |
| 38_Q | 234_I | 1.141 | 0.97 | |
| 159_Y | 163_K | 1.127 | 0.97 | |
| 71_E | 75_R | 1.12 | 0.96 | |
| 53_E | 57_S | 1.111 | 0.96 | |
| 109_A | 113_Q | 1.11 | 0.96 | |
| 87_C | 136_H | 1.107 | 0.96 | |
| 97_F | 117_A | 1.104 | 0.96 | |
| 29_L | 58_M | 1.1 | 0.96 | |
| 108_R | 120_F | 1.098 | 0.96 | |
| 56_N | 62_G | 1.094 | 0.96 | |
| 94_N | 144_T | 1.092 | 0.96 | |
| 75_R | 78_D | 1.091 | 0.96 | |
| 63_V | 76_A | 1.069 | 0.95 | |
| 101_G | 110_Q | 1.069 | 0.95 | |
| 35_L | 230_R | 1.061 | 0.95 | |
| 123_H | 169_W | 1.059 | 0.95 | |
| 19_L | 76_A | 1.058 | 0.95 | |
| 185_S | 232_A | 1.058 | 0.95 | |
| 31_S | 226_V | 1.058 | 0.95 | |
| 61_T | 84_T | 1.057 | 0.95 | |
| 102_P | 105_T | 1.056 | 0.95 | |
| 126_T | 169_W | 1.053 | 0.95 | |
| 150_L | 188_E | 1.046 | 0.94 | |
| 68_D | 113_Q | 1.043 | 0.94 | |
| 144_T | 229_V | 1.035 | 0.94 | |
| 16_K | 89_Y | 1.034 | 0.94 | |
| 53_E | 56_N | 1.029 | 0.94 | |
| 67_L | 121_G | 1.024 | 0.93 | |
| 122_A | 143_M | 1.024 | 0.93 | |
| 220_L | 242_Y | 1.022 | 0.93 | |
| 44_A | 60_F | 1.021 | 0.93 | |
| 149_G | 167_E | 1.019 | 0.93 | |
| 34_E | 223_E | 1.018 | 0.93 | |
| 30_E | 222_P | 1.011 | 0.93 | |
| 31_S | 92_F | 1.002 | 0.92 | |
| 111_M | 120_F | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4j2hA | 1 | 0.9294 | 100 | 0.222 | Contact Map | 0.733 |
| 2c07A | 1 | 0.9294 | 100 | 0.223 | Contact Map | 0.754 |
| 1vl8A | 2 | 0.9368 | 100 | 0.224 | Contact Map | 0.787 |
| 1zemA | 8 | 0.8922 | 100 | 0.229 | Contact Map | 0.836 |
| 3cxtA | 1 | 0.948 | 100 | 0.229 | Contact Map | 0.707 |
| 1ulsA | 8 | 0.9033 | 100 | 0.23 | Contact Map | 0.841 |
| 4iboA | 4 | 0.9257 | 100 | 0.23 | Contact Map | 0.825 |
| 3op4A | 2 | 0.9108 | 100 | 0.231 | Contact Map | 0.73 |
| 1xq1A | 1 | 0.9517 | 100 | 0.231 | Contact Map | 0.674 |
| 1iy8A | 8 | 0.9331 | 100 | 0.232 | Contact Map | 0.861 |
Sequence Conservation (Image Generated using WebLogo v3)