May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PUUE - SAPC
UniProt: P50457 - P0AGH5
Length: 717
Sequences: 620
Seq/Len: 0.89
I_Prob: 0.00

PUUE - 4-aminobutyrate aminotransferase PuuE
Paralog alert: 0.89 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ARGD ASTC BIOA GABT GSA PAT PUUE
SAPC - Peptide transport system permease protein SapC
Paralog alert: 0.77 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
257_A 206_F 1.28 0.00
207_V 131_L 0.97 0.00
87_T 190_V 0.94 0.00
229_D 103_F 0.93 0.00
106_F 140_A 0.88 0.00
286_D 189_Y 0.85 0.00
307_A 77_F 0.77 0.00
257_A 98_T 0.75 0.00
303_A 259_I 0.75 0.00
163_G 144_L 0.74 0.00
377_R 190_V 0.74 0.00
34_L 101_G 0.73 0.00
311_L 107_L 0.73 0.00
118_V 194_R 0.71 0.00
118_V 213_T 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1932 seconds.