May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DPPB - YIAC
UniProt: P0AEF8 - P37664
Length: 485
Sequences: 483
Seq/Len: 1.04
I_Prob: 0.00

DPPB - Dipeptide transport system permease protein DppB
Paralog alert: 0.81 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
YIAC - Uncharacterized N-acetyltransferase YiaC
Paralog alert: 0.85 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ATDA PHNO RIMI RIMJ RIML YAFP YEDL YHHY YIAC YJAB YJGM YNCA YPEA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_S 2_I 1.00 0.00
237_I 8_S 0.98 0.00
67_L 63_V 0.87 0.00
236_Y 113_N 0.84 0.00
106_A 16_L 0.83 0.00
245_L 79_K 0.82 0.00
6_L 76_V 0.81 0.00
261_L 12_A 0.81 0.00
74_M 16_L 0.79 0.00
149_G 87_K 0.79 0.00
119_V 59_L 0.78 0.00
5_I 76_V 0.78 0.00
129_F 76_V 0.78 0.00
233_G 61_G 0.78 0.00
94_P 2_I 0.77 0.00
250_V 8_S 0.77 0.00
66_Y 29_K 0.77 0.00
137_A 16_L 0.75 0.00
30_I 76_V 0.75 0.00
311_L 5_A 0.75 0.00
237_I 7_R 0.74 0.00
76_G 90_M 0.74 0.00
121_A 83_R 0.73 0.00
10_G 56_D 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1045 seconds.