| UniProt: | P0A948 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10851 | ||
| Length: | 194 (182) | ||
| Sequences: | 9108 | ||
| Seq/Len: | 50.04 |
| RIMJ
Paralog alert: 0.83 [within 20: 0.16] - ratio of genomes with paralogs Cluster includes: ATDA PHNO RIMI RIMJ RIML YAFP YEDL YHHY YIAC YJAB YJGM YNCA YPEA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 122_F | 158_R | 3.466 | 1.00 | |
| 21_R | 27_D | 3.014 | 1.00 | |
| 21_R | 81_F | 2.983 | 1.00 | |
| 163_K | 166_Y | 2.673 | 1.00 | |
| 164_E | 184_A | 2.661 | 1.00 | |
| 143_A | 156_L | 2.602 | 1.00 | |
| 154_D | 157_A | 2.503 | 1.00 | |
| 163_K | 181_V | 2.283 | 1.00 | |
| 82_D | 85_E | 2.258 | 1.00 | |
| 17_R | 123_E | 2.216 | 1.00 | |
| 130_R | 134_R | 2.142 | 1.00 | |
| 105_C | 138_I | 2.083 | 1.00 | |
| 129_I | 141_I | 2.017 | 1.00 | |
| 14_T | 83_P | 1.979 | 1.00 | |
| 94_F | 132_M | 1.969 | 1.00 | |
| 145_Y | 153_G | 1.939 | 1.00 | |
| 15_T | 127_A | 1.93 | 1.00 | |
| 145_Y | 156_L | 1.901 | 1.00 | |
| 15_T | 123_E | 1.884 | 1.00 | |
| 139_H | 169_D | 1.869 | 1.00 | |
| 29_W | 56_P | 1.856 | 1.00 | |
| 157_A | 163_K | 1.85 | 1.00 | |
| 23_V | 79_G | 1.782 | 1.00 | |
| 147_P | 179_D | 1.775 | 1.00 | |
| 79_G | 88_I | 1.77 | 1.00 | |
| 169_D | 188_P | 1.758 | 1.00 | |
| 166_Y | 181_V | 1.742 | 1.00 | |
| 132_M | 141_I | 1.732 | 1.00 | |
| 153_G | 181_V | 1.728 | 1.00 | |
| 129_I | 161_F | 1.725 | 1.00 | |
| 89_I | 115_W | 1.722 | 1.00 | |
| 140_R | 184_A | 1.673 | 1.00 | |
| 153_G | 157_A | 1.671 | 1.00 | |
| 127_A | 130_R | 1.657 | 1.00 | |
| 140_R | 164_E | 1.606 | 1.00 | |
| 111_I | 121_M | 1.576 | 1.00 | |
| 92_A | 128_A | 1.569 | 1.00 | |
| 107_L | 125_L | 1.514 | 1.00 | |
| 172_L | 177_W | 1.491 | 1.00 | |
| 25_D | 64_G | 1.461 | 1.00 | |
| 56_P | 60_Q | 1.451 | 1.00 | |
| 122_F | 155_L | 1.444 | 1.00 | |
| 166_Y | 179_D | 1.444 | 1.00 | |
| 87_E | 114_K | 1.44 | 1.00 | |
| 92_A | 124_A | 1.425 | 1.00 | |
| 129_I | 185_L | 1.422 | 1.00 | |
| 125_L | 159_L | 1.422 | 1.00 | |
| 37_E | 113_Q | 1.42 | 1.00 | |
| 153_G | 163_K | 1.413 | 1.00 | |
| 55_Y | 58_G | 1.411 | 1.00 | |
| 153_G | 183_T | 1.398 | 0.99 | |
| 30_R | 88_I | 1.39 | 0.99 | |
| 122_F | 159_L | 1.385 | 0.99 | |
| 81_F | 86_K | 1.358 | 0.99 | |
| 133_Q | 187_T | 1.321 | 0.99 | |
| 13_L | 127_A | 1.305 | 0.99 | |
| 30_R | 87_E | 1.287 | 0.99 | |
| 167_A | 182_L | 1.287 | 0.99 | |
| 112_G | 115_W | 1.282 | 0.99 | |
| 80_L | 124_A | 1.277 | 0.99 | |
| 80_L | 111_I | 1.214 | 0.98 | |
| 150_K | 153_G | 1.213 | 0.98 | |
| 91_V | 110_S | 1.211 | 0.98 | |
| 109_Y | 156_L | 1.204 | 0.98 | |
| 147_P | 166_Y | 1.193 | 0.98 | |
| 163_K | 183_T | 1.19 | 0.98 | |
| 109_Y | 152_S | 1.178 | 0.98 | |
| 152_S | 156_L | 1.174 | 0.98 | |
| 28_A | 63_L | 1.17 | 0.97 | |
| 29_W | 33_D | 1.161 | 0.97 | |
| 19_V | 83_P | 1.155 | 0.97 | |
| 60_Q | 64_G | 1.152 | 0.97 | |
| 150_K | 154_D | 1.146 | 0.97 | |
| 39_R | 113_Q | 1.14 | 0.97 | |
| 15_T | 18_L | 1.136 | 0.97 | |
| 25_D | 60_Q | 1.13 | 0.97 | |
| 139_H | 177_W | 1.116 | 0.96 | |
| 116_Q | 151_R | 1.112 | 0.96 | |
| 147_P | 181_V | 1.112 | 0.96 | |
| 131_Y | 135_T | 1.108 | 0.96 | |
| 19_V | 81_F | 1.091 | 0.96 | |
| 156_L | 161_F | 1.09 | 0.96 | |
| 34_Y | 110_S | 1.087 | 0.96 | |
| 169_D | 179_D | 1.086 | 0.96 | |
| 161_F | 185_L | 1.078 | 0.95 | |
| 37_E | 112_G | 1.076 | 0.95 | |
| 82_D | 89_I | 1.065 | 0.95 | |
| 30_R | 33_D | 1.057 | 0.95 | |
| 168_K | 184_A | 1.053 | 0.95 | |
| 162_E | 168_K | 1.044 | 0.94 | |
| 148_H | 178_R | 1.044 | 0.94 | |
| 170_Y | 180_H | 1.043 | 0.94 | |
| 28_A | 56_P | 1.037 | 0.94 | |
| 61_A | 65_M | 1.021 | 0.93 | |
| 126_T | 159_L | 1.021 | 0.93 | |
| 121_M | 155_L | 1.016 | 0.93 | |
| 129_I | 159_L | 1.009 | 0.93 | |
| 13_L | 20_V | 1.009 | 0.93 | |
| 62_R | 66_I | 1.005 | 0.93 | |
| 131_Y | 136_Q | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2vzyA | 4 | 0.9588 | 100 | 0.316 | Contact Map | 0.762 |
| 3pzjA | 2 | 0.9588 | 100 | 0.317 | Contact Map | 0.773 |
| 1yreA | 4 | 0.9381 | 100 | 0.317 | Contact Map | 0.785 |
| 3r9fA | 2 | 0.9381 | 100 | 0.318 | Contact Map | 0.769 |
| 2fckA | 1 | 0.933 | 100 | 0.32 | Contact Map | 0.801 |
| 1nslA | 6 | 0.9433 | 100 | 0.324 | Contact Map | 0.89 |
| 3igrA | 2 | 0.9485 | 100 | 0.328 | Contact Map | 0.783 |
| 2z10A | 1 | 0.9227 | 99.9 | 0.349 | Contact Map | 0.746 |
| 1s7kA | 1 | 0.9381 | 99.9 | 0.35 | Contact Map | 0.76 |
| 3fbuA | 2 | 0.866 | 99.9 | 0.368 | Contact Map | 0.858 |
Sequence Conservation (Image Generated using WebLogo v3)