| UniProt: | P39337 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12532 | ||
| Length: | 167 (161) | ||
| Sequences: | 13864 | ||
| Seq/Len: | 86.11 |
| YJGM
Paralog alert: 0.86 [within 20: 0.23] - ratio of genomes with paralogs Cluster includes: ATDA PHNO RIMI RIMJ RIML YAFP YEDL YHHY YIAC YJAB YJGM YNCA YPEA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 12_R | 66_E | 3.731 | 1.00 | |
| 113_M | 144_F | 2.893 | 1.00 | |
| 28_Q | 96_L | 2.749 | 1.00 | |
| 75_G | 112_A | 2.675 | 1.00 | |
| 12_R | 18_D | 2.625 | 1.00 | |
| 106_K | 142_L | 2.565 | 1.00 | |
| 111_M | 114_E | 2.529 | 1.00 | |
| 106_K | 141_H | 2.491 | 1.00 | |
| 72_V | 99_I | 2.38 | 1.00 | |
| 65_V | 104_L | 2.349 | 1.00 | |
| 113_M | 165_R | 2.34 | 1.00 | |
| 140_E | 146_H | 2.212 | 1.00 | |
| 136_I | 140_E | 2.18 | 1.00 | |
| 64_V | 71_V | 2.174 | 1.00 | |
| 63_W | 111_M | 2.165 | 1.00 | |
| 115_Q | 119_M | 2.085 | 1.00 | |
| 115_Q | 118_E | 2.007 | 1.00 | |
| 109_A | 142_L | 2.006 | 1.00 | |
| 123_R | 164_L | 1.938 | 1.00 | |
| 110_L | 142_L | 1.928 | 1.00 | |
| 113_M | 124_C | 1.904 | 1.00 | |
| 67_Y | 72_V | 1.861 | 1.00 | |
| 73_G | 95_F | 1.762 | 1.00 | |
| 137_A | 140_E | 1.704 | 1.00 | |
| 21_A | 24_R | 1.695 | 1.00 | |
| 14_L | 22_I | 1.69 | 1.00 | |
| 126_L | 139_Y | 1.683 | 1.00 | |
| 111_M | 115_Q | 1.631 | 1.00 | |
| 99_I | 102_K | 1.594 | 1.00 | |
| 67_Y | 102_K | 1.586 | 1.00 | |
| 70_E | 98_A | 1.578 | 1.00 | |
| 67_Y | 99_I | 1.545 | 1.00 | |
| 106_K | 110_L | 1.541 | 1.00 | |
| 88_C | 116_A | 1.517 | 1.00 | |
| 146_H | 149_Y | 1.517 | 1.00 | |
| 77_I | 112_A | 1.483 | 1.00 | |
| 66_E | 71_V | 1.457 | 1.00 | |
| 63_W | 115_Q | 1.454 | 1.00 | |
| 66_E | 69_G | 1.438 | 1.00 | |
| 62_Y | 76_G | 1.434 | 1.00 | |
| 128_T | 132_L | 1.434 | 1.00 | |
| 136_I | 146_H | 1.416 | 1.00 | |
| 114_E | 118_E | 1.397 | 0.99 | |
| 61_A | 119_M | 1.386 | 0.99 | |
| 10_V | 66_E | 1.385 | 0.99 | |
| 21_A | 71_V | 1.367 | 0.99 | |
| 133_K | 137_A | 1.365 | 0.99 | |
| 70_E | 96_L | 1.353 | 0.99 | |
| 147_I | 164_L | 1.32 | 0.99 | |
| 20_P | 48_L | 1.308 | 0.99 | |
| 16_L | 52_Y | 1.29 | 0.99 | |
| 103_G | 106_K | 1.264 | 0.99 | |
| 135_A | 139_Y | 1.26 | 0.99 | |
| 88_C | 121_F | 1.259 | 0.99 | |
| 75_G | 108_L | 1.23 | 0.98 | |
| 24_R | 96_L | 1.224 | 0.98 | |
| 96_L | 99_I | 1.205 | 0.98 | |
| 100_R | 134_E | 1.205 | 0.98 | |
| 95_F | 104_L | 1.2 | 0.98 | |
| 77_I | 116_A | 1.174 | 0.98 | |
| 14_L | 64_V | 1.157 | 0.97 | |
| 128_T | 135_A | 1.136 | 0.97 | |
| 72_V | 104_L | 1.124 | 0.97 | |
| 107_K | 111_M | 1.119 | 0.96 | |
| 133_K | 136_I | 1.116 | 0.96 | |
| 13_R | 115_Q | 1.102 | 0.96 | |
| 146_H | 161_V | 1.099 | 0.96 | |
| 28_Q | 97_P | 1.092 | 0.96 | |
| 130_A | 159_C | 1.087 | 0.96 | |
| 13_R | 61_A | 1.085 | 0.96 | |
| 65_V | 108_L | 1.085 | 0.96 | |
| 79_P | 121_F | 1.082 | 0.96 | |
| 29_V | 94_Y | 1.08 | 0.95 | |
| 24_R | 28_Q | 1.078 | 0.95 | |
| 48_L | 52_Y | 1.069 | 0.95 | |
| 23_A | 27_R | 1.067 | 0.95 | |
| 116_A | 124_C | 1.063 | 0.95 | |
| 65_V | 73_G | 1.055 | 0.95 | |
| 90_L | 109_A | 1.049 | 0.94 | |
| 21_A | 25_V | 1.043 | 0.94 | |
| 130_A | 149_Y | 1.04 | 0.94 | |
| 113_M | 117_R | 1.039 | 0.94 | |
| 14_L | 62_Y | 1.038 | 0.94 | |
| 114_E | 117_R | 1.033 | 0.94 | |
| 26_I | 74_G | 1.031 | 0.94 | |
| 18_D | 66_E | 1.028 | 0.94 | |
| 27_R | 31_A | 1.008 | 0.93 | |
| 11_M | 111_M | 1.005 | 0.93 | |
| 149_Y | 159_C | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2j8mA | 2 | 0.9521 | 99.9 | 0.247 | Contact Map | 0.753 |
| 3dr6A | 3 | 0.9581 | 99.9 | 0.256 | Contact Map | 0.866 |
| 4e2aA | 2 | 1 | 99.9 | 0.261 | Contact Map | 0.784 |
| 3d8pA | 2 | 0.9341 | 99.9 | 0.278 | Contact Map | 0.758 |
| 1tiqA | 2 | 0.9641 | 99.8 | 0.286 | Contact Map | 0.755 |
| 3kkwA | 1 | 0.9641 | 99.8 | 0.287 | Contact Map | 0.703 |
| 4l8aA | 1 | 0.9401 | 99.8 | 0.288 | Contact Map | 0.714 |
| 2oh1A | 4 | 0.9461 | 99.8 | 0.292 | Contact Map | 0.715 |
| 4j3gA | 4 | 0.988 | 99.8 | 0.296 | Contact Map | 0.837 |
| 2ob0A | 3 | 0.9102 | 99.8 | 0.3 | Contact Map | 0.819 |
Sequence Conservation (Image Generated using WebLogo v3)