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OPENSEQ.org
RUTR - YIAV
UniProt: P0ACU2 - P37683
Length: 590
Sequences: 672
Seq/Len: 1.29
I_Prob: 0.00
RUTR - HTH-type transcriptional regulator RutR
Paralog alert: 0.77 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC 		YIAV - Inner membrane protein YiaV
Paralog alert: 0.75 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: AAEA ACRA ACRE EMRA EMRK MACA MDTA MDTE MDTN YBHG YDHJ YHII YIAV YIBH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
147_G 278_A 0.91 0.00
69_V 145_Y 0.91 0.00
166_I 271_R 0.91 0.00
55_L 330_L 0.90 0.00
149_V 224_A 0.89 0.00
39_T 90_V 0.88 0.00
141_K 130_N 0.85 0.00
139_D 230_V 0.85 0.00
62_K 153_Q 0.85 0.00
37_H 230_V 0.84 0.00
77_W 242_A 0.83 0.00
64_A 117_Q 0.83 0.00
141_K 230_V 0.82 0.00
118_E 68_P 0.81 0.00
58_Y 77_V 0.80 0.00
34_F 326_A 0.79 0.00
176_F 66_V 0.78 0.00
94_I 280_V 0.78 0.00
69_V 208_A 0.78 0.00
45_A 349_V 0.78 0.00
20_K 148_Y 0.77 0.00
91_L 233_V 0.77 0.00
57_Y 297_I 0.77 0.00
159_P 107_M 0.76 0.00
27_A 294_L 0.76 0.00
91_L 294_L 0.76 0.00
129_E 74_V 0.75 0.00
29_D 280_V 0.74 0.00
92_A 280_V 0.74 0.00
67_I 230_V 0.73 0.00
147_G 230_V 0.73 0.00
143_A 273_A 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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