| UniProt: | P0C093 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11191 | ||
| Length: | 198 (192) | ||
| Sequences: | 20477 | ||
| Seq/Len: | 106.65 |
| SLMA
Paralog alert: 0.84 [within 20: 0.25] - ratio of genomes with paralogs Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 26_S | 36_K | 3.946 | 1.00 | |
| 21_L | 40_S | 3.664 | 1.00 | |
| 35_A | 45_E | 3.41 | 1.00 | |
| 53_P | 57_R | 2.901 | 1.00 | |
| 137_R | 156_T | 2.31 | 1.00 | |
| 22_M | 32_I | 2.261 | 1.00 | |
| 23_L | 32_I | 2.215 | 1.00 | |
| 13_E | 65_F | 2.201 | 1.00 | |
| 87_R | 142_E | 2.195 | 1.00 | |
| 83_D | 86_A | 2.165 | 1.00 | |
| 54_S | 57_R | 2.162 | 1.00 | |
| 25_S | 40_S | 2.158 | 1.00 | |
| 11_R | 14_E | 2.046 | 1.00 | |
| 18_S | 40_S | 2.028 | 1.00 | |
| 12_R | 61_S | 1.999 | 1.00 | |
| 44_S | 47_A | 1.952 | 1.00 | |
| 38_A | 48_L | 1.947 | 1.00 | |
| 141_R | 145_M | 1.926 | 1.00 | |
| 35_A | 39_A | 1.884 | 1.00 | |
| 137_R | 141_R | 1.855 | 1.00 | |
| 13_E | 17_Q | 1.851 | 1.00 | |
| 19_L | 23_L | 1.833 | 1.00 | |
| 22_M | 40_S | 1.817 | 1.00 | |
| 14_E | 18_S | 1.809 | 1.00 | |
| 22_M | 36_K | 1.747 | 1.00 | |
| 141_R | 155_E | 1.735 | 1.00 | |
| 20_A | 65_F | 1.715 | 1.00 | |
| 64_E | 124_R | 1.713 | 1.00 | |
| 61_S | 64_E | 1.681 | 1.00 | |
| 22_M | 26_S | 1.642 | 1.00 | |
| 75_N | 135_Q | 1.606 | 1.00 | |
| 16_L | 61_S | 1.548 | 1.00 | |
| 141_R | 144_R | 1.547 | 1.00 | |
| 17_Q | 65_F | 1.532 | 1.00 | |
| 23_L | 28_G | 1.502 | 1.00 | |
| 18_S | 21_L | 1.499 | 1.00 | |
| 19_L | 58_M | 1.494 | 1.00 | |
| 143_K | 149_E | 1.488 | 1.00 | |
| 32_I | 37_L | 1.471 | 1.00 | |
| 89_R | 187_D | 1.471 | 1.00 | |
| 34_T | 48_L | 1.463 | 1.00 | |
| 57_R | 61_S | 1.451 | 1.00 | |
| 83_D | 148_G | 1.438 | 1.00 | |
| 34_T | 49_Y | 1.437 | 1.00 | |
| 56_T | 118_Q | 1.425 | 1.00 | |
| 12_R | 51_H | 1.424 | 1.00 | |
| 65_F | 69_S | 1.397 | 0.99 | |
| 27_D | 31_R | 1.389 | 0.99 | |
| 36_K | 39_A | 1.377 | 0.99 | |
| 27_D | 32_I | 1.376 | 0.99 | |
| 21_L | 25_S | 1.368 | 0.99 | |
| 133_E | 160_S | 1.361 | 0.99 | |
| 52_F | 61_S | 1.352 | 0.99 | |
| 143_K | 148_G | 1.314 | 0.99 | |
| 34_T | 45_E | 1.309 | 0.99 | |
| 142_E | 146_R | 1.298 | 0.99 | |
| 37_L | 58_M | 1.294 | 0.99 | |
| 33_T | 36_K | 1.291 | 0.99 | |
| 36_K | 40_S | 1.284 | 0.99 | |
| 28_G | 59_F | 1.281 | 0.99 | |
| 89_R | 93_L | 1.268 | 0.99 | |
| 164_A | 168_G | 1.255 | 0.99 | |
| 60_D | 124_R | 1.248 | 0.99 | |
| 20_A | 62_L | 1.244 | 0.98 | |
| 43_V | 47_A | 1.231 | 0.98 | |
| 93_L | 186_F | 1.221 | 0.98 | |
| 16_L | 52_F | 1.216 | 0.98 | |
| 18_S | 41_V | 1.205 | 0.98 | |
| 161_Q | 165_F | 1.203 | 0.98 | |
| 47_A | 50_R | 1.202 | 0.98 | |
| 137_R | 155_E | 1.195 | 0.98 | |
| 154_D | 157_L | 1.188 | 0.98 | |
| 16_L | 62_L | 1.185 | 0.98 | |
| 85_T | 89_R | 1.182 | 0.98 | |
| 26_S | 31_R | 1.173 | 0.98 | |
| 157_L | 188_A | 1.168 | 0.97 | |
| 10_N | 13_E | 1.167 | 0.97 | |
| 20_A | 66_I | 1.166 | 0.97 | |
| 60_D | 64_E | 1.163 | 0.97 | |
| 84_T | 146_R | 1.161 | 0.97 | |
| 144_R | 155_E | 1.159 | 0.97 | |
| 87_R | 139_V | 1.154 | 0.97 | |
| 93_L | 187_D | 1.152 | 0.97 | |
| 44_S | 50_R | 1.143 | 0.97 | |
| 86_A | 90_L | 1.139 | 0.97 | |
| 17_Q | 21_L | 1.125 | 0.97 | |
| 20_A | 24_E | 1.1 | 0.96 | |
| 181_R | 184_D | 1.098 | 0.96 | |
| 64_E | 68_D | 1.09 | 0.96 | |
| 49_Y | 54_S | 1.077 | 0.95 | |
| 10_N | 14_E | 1.071 | 0.95 | |
| 140_L | 155_E | 1.061 | 0.95 | |
| 56_T | 120_R | 1.057 | 0.95 | |
| 90_L | 93_L | 1.055 | 0.95 | |
| 93_L | 183_T | 1.051 | 0.94 | |
| 11_R | 51_H | 1.05 | 0.94 | |
| 192_L | 196_Q | 1.043 | 0.94 | |
| 18_S | 22_M | 1.04 | 0.94 | |
| 56_T | 60_D | 1.034 | 0.94 | |
| 57_R | 60_D | 1.026 | 0.94 | |
| 5_Q | 8_K | 1.023 | 0.93 | |
| 135_Q | 138_Q | 1.023 | 0.93 | |
| 86_A | 89_R | 1.011 | 0.93 | |
| 73_R | 94_L | 1.009 | 0.93 | |
| 133_E | 137_R | 1.005 | 0.93 | |
| 46_A | 50_R | 1.001 | 0.92 | |
| 139_V | 143_K | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4gckA | 4 | 0.9949 | 100 | 0.08 | Contact Map | 0.756 |
| 2ibdA | 2 | 0.9899 | 100 | 0.094 | Contact Map | 0.751 |
| 4gfkA | 2 | 0.9848 | 100 | 0.1 | Contact Map | 0.732 |
| 2xdnA | 4 | 0.9949 | 100 | 0.1 | Contact Map | 0.736 |
| 3vibA | 4 | 0.9949 | 100 | 0.113 | Contact Map | 0.747 |
| 3kz9A | 4 | 0.9899 | 100 | 0.118 | Contact Map | 0.798 |
| 2gfnA | 2 | 0.9899 | 100 | 0.119 | Contact Map | 0.778 |
| 3g1oA | 1 | 0.9848 | 100 | 0.119 | Contact Map | 0.654 |
| 3dcfA | 2 | 0.9747 | 100 | 0.119 | Contact Map | 0.614 |
| 1vi0A | 2 | 0.9798 | 100 | 0.12 | Contact Map | 0.782 |
Sequence Conservation (Image Generated using WebLogo v3)