May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

EXUR - TDCB
UniProt: P0ACL2 - P0AGF6
Length: 587
Sequences: 681
Seq/Len: 1.26
I_Prob: 0.00

EXUR - Exu regulon transcriptional regulator
Paralog alert: 0.78 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: CSIR DGOR EXUR FADR GLCC LLDR MCBR NANR PDHR UXUR YDFH YIEP
TDCB - L-threonine dehydratase catabolic TdcB
Paralog alert: 0.92 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: CYSK CYSM DPAL SDHD TDCB TRPB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
198_I 66_L 1.02 0.00
62_V 35_Y 0.97 0.00
61_Y 143_E 0.96 0.00
49_V 274_I 0.86 0.00
126_A 44_I 0.84 0.00
103_L 302_Q 0.83 0.00
128_Q 310_I 0.82 0.00
166_M 44_I 0.81 0.00
49_V 25_I 0.78 0.00
155_Q 275_Q 0.78 0.00
222_K 264_D 0.74 0.00
66_K 124_V 0.72 0.00
118_K 79_V 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0847 seconds.