| UniProt: | P76584 - P77509 | ||
| Length: | 793 | ||
| Sequences: | 549 | ||
| Seq/Len: | 0.71 | ||
| I_Prob: | 0.00 |
| YPHB - Uncharacterized protein YphB
Paralog alert: 0.62 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: GALM YEAD YIHR YPHB |
YPHE - Uncharacterized ABC transporter ATP-binding protein YphE Paralog alert: 0.93 [within 20: 0.28] - ratio of genomes with paralogs Cluster includes: ALSA ARAG GSIA LSRA MGLA MODF RBSA UUP XYLG YBHF YBIT YEJF YHES YJJK YPHE YTFR |
Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
| 3qf4 | A:B:A:B | Contact Map |
| i | j | Scaled Score | I_Prob |
| 121_H | 41_L | 1.38 | 0.00 |
| 101_L | 449_E | 1.16 | 0.00 |
| 249_F | 214_R | 1.05 | 0.00 |
| 207_N | 458_V | 0.94 | 0.00 |
| 45_A | 459_F | 0.94 | 0.00 |
| 72_Q | 212_I | 0.91 | 0.00 |
| 188_F | 293_I | 0.91 | 0.00 |
| 122_L | 481_T | 0.86 | 0.00 |
| 22_I | 284_T | 0.85 | 0.00 |
| 275_P | 285_L | 0.84 | 0.00 |
| 94_V | 285_L | 0.84 | 0.00 |
| 129_V | 130_A | 0.83 | 0.00 |
| 232_Y | 167_E | 0.81 | 0.00 |
| 91_W | 265_A | 0.80 | 0.00 |
| 8_H | 203_I | 0.80 | 0.00 |
| 168_L | 201_A | 0.78 | 0.00 |
| 22_I | 384_T | 0.77 | 0.00 |
Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)
Text file of predictions (includes both intra and inter preds)