May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

XYLB - YIAC
UniProt: P09099 - P37664
Length: 630
Sequences: 428
Seq/Len: 0.69
I_Prob: 0.00

XYLB - Xylulose kinase
Paralog alert: 0.75 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ARAB FUCK GLPK LSRK LYXK RHAB XYLB YGCE
YIAC - Uncharacterized N-acetyltransferase YiaC
Paralog alert: 0.85 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ATDA PHNO RIMI RIMJ RIML YAFP YEDL YHHY YIAC YJAB YJGM YNCA YPEA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
67_D 51_W 1.00 0.00
358_P 86_G 0.94 0.00
299_D 86_G 0.93 0.00
56_M 90_M 0.92 0.00
441_S 86_G 0.91 0.00
27_Q 93_V 0.91 0.00
387_P 93_V 0.90 0.00
38_P 9_E 0.86 0.00
18_N 113_N 0.86 0.00
72_G 60_L 0.86 0.00
210_G 100_L 0.84 0.00
161_T 114_F 0.81 0.00
68_V 85_I 0.80 0.00
447_P 76_V 0.80 0.00
57_K 60_L 0.78 0.00
68_V 76_V 0.78 0.00
2_Y 52_V 0.77 0.00
386_K 71_L 0.76 0.00
327_V 57_G 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0393 seconds.