May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

SUFD - SUFS
UniProt: P77689 - P77444
Length: 829
Sequences: 1178
Seq/Len: 1.47
I_Prob: 0.00

SUFD - FeS cluster assembly protein SufD
Paralog alert: 0.61 [within 20: 0.38] - ratio of genomes with paralogs
Cluster includes: SUFB SUFD
SUFS - Cysteine desulfurase
Paralog alert: 0.93 [within 20: 0.47] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
328_G 254_S 0.99 0.00
358_C 57_G 0.95 0.00
388_M 333_G 0.88 0.00
252_V 191_H 0.86 0.00
248_L 51_Y 0.84 0.00
369_D 94_T 0.84 0.00
170_H 69_M 0.82 0.00
142_V 91_V 0.80 0.00
307_D 161_F 0.79 0.00
312_V 128_V 0.79 0.00
252_V 67_E 0.77 0.00
210_N 44_A 0.77 0.00
252_V 186_M 0.75 0.00
300_L 202_A 0.75 0.00
50_K 378_C 0.73 0.00
270_I 32_S 0.72 0.00
181_A 295_S 0.71 0.00
270_I 121_M 0.70 0.00
294_F 208_H 0.70 0.00
213_L 186_M 0.70 0.00
106_Y 300_N 0.70 0.00
345_T 241_A 0.69 0.00
314_N 173_V 0.69 0.00
181_A 4_S 0.68 0.00
342_E 93_G 0.68 0.00
389_I 59_H 0.68 0.00
304_I 62_S 0.68 0.00
143_K 292_E 0.68 0.00
174_H 118_I 0.67 0.00
396_E 155_E 0.66 0.00
142_V 372_Y 0.66 0.00
274_A 356_I 0.66 0.00
398_T 347_V 0.66 0.00
317_I 258_T 0.66 0.00
248_L 105_W 0.66 0.00
362_A 106_G 0.66 0.00
226_H 325_L 0.66 0.00
398_T 401_I 0.65 0.00
309_G 188_T 0.65 0.00
405_G 291_L 0.65 0.00
186_I 204_A 0.64 0.00
388_M 339_L 0.64 0.00
294_F 166_R 0.64 0.00
145_G 163_E 0.64 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.278 seconds.