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OPENSEQ.org

NUDJ - POTD
UniProt: P0AEI6 - P0AFK9
Length: 501
Sequences: 282
Seq/Len: 0.62
I_Prob: 0.00

NUDJ - Phosphatase NudJ
Paralog alert: 0.65 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: GMM MUTT NUDG NUDJ
POTD - Spermidine/putrescine-binding periplasmic protein
Paralog alert: 0.84 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
43_T 277_F 1.35 0.00
10_C 151_W 1.20 0.00
22_E 225_L 1.17 0.00
115_A 79_L 1.17 0.00
17_K 296_P 1.01 0.00
12_V 194_A 1.01 0.00
12_V 61_S 0.97 0.00
87_E 151_W 0.96 0.00
12_V 114_M 0.94 0.00
20_V 138_V 0.93 0.00
29_A 141_D 0.93 0.00
127_I 245_V 0.91 0.00
60_A 225_L 0.89 0.00
98_D 29_L 0.89 0.00
19_L 164_L 0.89 0.00
57_G 268_K 0.88 0.00
34_P 99_I 0.87 0.00
128_R 261_I 0.86 0.00
87_E 190_K 0.86 0.00
62_P 225_L 0.85 0.00
56_T 204_P 0.85 0.00
46_E 42_L 0.84 0.00
43_T 97_Q 0.83 0.00
41_D 194_A 0.81 0.00
57_G 156_K 0.80 0.00
88_L 223_V 0.80 0.00
8_V 58_T 0.79 0.00
121_P 279_L 0.79 0.00
131_Q 29_L 0.79 0.00
8_V 40_P 0.79 0.00
76_K 78_D 0.79 0.00
65_F 27_N 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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