| UniProt: | P32056 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11789 | ||
| Length: | 159 (138) | ||
| Sequences: | 3208 | ||
| Seq/Len: | 23.25 |
| GMM
Paralog alert: 0.65 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: GMM MUTT NUDG NUDJ |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 67_M | 73_R | 5.23 | 1.00 | |
| 26_N | 30_E | 4.711 | 1.00 | |
| 52_V | 61_A | 3.524 | 1.00 | |
| 35_K | 125_D | 3.358 | 1.00 | |
| 57_T | 60_A | 2.91 | 1.00 | |
| 30_E | 130_T | 2.845 | 1.00 | |
| 22_F | 62_F | 2.335 | 1.00 | |
| 130_T | 133_A | 2.163 | 1.00 | |
| 58_L | 107_F | 2.114 | 1.00 | |
| 33_L | 129_L | 2.018 | 1.00 | |
| 75_P | 110_R | 2.014 | 1.00 | |
| 35_K | 124_D | 1.915 | 1.00 | |
| 24_V | 66_T | 1.898 | 1.00 | |
| 76_I | 79_G | 1.871 | 1.00 | |
| 79_G | 110_R | 1.865 | 1.00 | |
| 22_F | 109_F | 1.85 | 1.00 | |
| 29_G | 131_S | 1.844 | 1.00 | |
| 81_F | 84_V | 1.839 | 1.00 | |
| 37_T | 124_D | 1.793 | 1.00 | |
| 81_F | 105_L | 1.737 | 1.00 | |
| 25_E | 108_R | 1.555 | 1.00 | |
| 133_A | 136_A | 1.546 | 1.00 | |
| 34_G | 123_H | 1.544 | 1.00 | |
| 45_W | 127_R | 1.541 | 1.00 | |
| 56_E | 64_R | 1.525 | 1.00 | |
| 73_R | 113_E | 1.501 | 1.00 | |
| 63_E | 67_M | 1.492 | 1.00 | |
| 20_L | 61_A | 1.487 | 1.00 | |
| 145_R | 149_L | 1.48 | 1.00 | |
| 72_L | 111_V | 1.467 | 1.00 | |
| 22_F | 66_T | 1.456 | 1.00 | |
| 58_L | 105_L | 1.427 | 1.00 | |
| 66_T | 74_L | 1.402 | 0.99 | |
| 20_L | 62_F | 1.366 | 0.99 | |
| 129_L | 137_S | 1.366 | 0.99 | |
| 25_E | 131_S | 1.338 | 0.99 | |
| 25_E | 110_R | 1.325 | 0.99 | |
| 129_L | 135_L | 1.313 | 0.99 | |
| 86_Q | 101_H | 1.293 | 0.99 | |
| 66_T | 109_F | 1.269 | 0.99 | |
| 118_L | 123_H | 1.257 | 0.99 | |
| 74_L | 109_F | 1.25 | 0.99 | |
| 76_I | 110_R | 1.24 | 0.98 | |
| 80_Q | 108_R | 1.23 | 0.98 | |
| 39_R | 42_Q | 1.226 | 0.98 | |
| 63_E | 79_G | 1.217 | 0.98 | |
| 118_L | 126_Y | 1.216 | 0.98 | |
| 63_E | 74_L | 1.214 | 0.98 | |
| 65_L | 68_A | 1.184 | 0.98 | |
| 84_V | 105_L | 1.136 | 0.97 | |
| 52_V | 103_V | 1.118 | 0.96 | |
| 63_E | 75_P | 1.109 | 0.96 | |
| 83_G | 150_A | 1.105 | 0.96 | |
| 65_L | 69_E | 1.103 | 0.96 | |
| 36_R | 46_F | 1.071 | 0.95 | |
| 56_E | 61_A | 1.065 | 0.95 | |
| 63_E | 76_I | 1.051 | 0.94 | |
| 34_G | 126_Y | 1.043 | 0.94 | |
| 73_R | 112_S | 1.041 | 0.94 | |
| 52_V | 58_L | 1.038 | 0.94 | |
| 60_A | 63_E | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1ryaA | 2 | 1 | 100 | 0.263 | Contact Map | 0.753 |
| 4ktbA | 4 | 0.9748 | 99.9 | 0.358 | Contact Map | 0.689 |
| 3gwyA | 2 | 0.8428 | 99.9 | 0.383 | Contact Map | 0.766 |
| 2qjoA | 3 | 0.9434 | 99.9 | 0.387 | Contact Map | 0.575 |
| 3cngA | 4 | 0.9119 | 99.9 | 0.39 | Contact Map | 0.791 |
| 3f6aA | 2 | 0.8931 | 99.9 | 0.391 | Contact Map | 0.692 |
| 3fk9A | 2 | 0.8491 | 99.9 | 0.393 | Contact Map | 0.677 |
| 2b0vA | 1 | 0.8868 | 99.9 | 0.393 | Contact Map | 0.753 |
| 3gz5A | 2 | 0.9434 | 99.9 | 0.396 | Contact Map | 0.733 |
| 2qjtB | 2 | 0.956 | 99.9 | 0.397 | Contact Map | 0.66 |
Sequence Conservation (Image Generated using WebLogo v3)