| UniProt: | P0AEI6 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13446 | ||
| Length: | 153 (133) | ||
| Sequences: | 3840 | ||
| Seq/Len: | 28.87 |
| NUDJ
Paralog alert: 0.65 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: GMM MUTT NUDG NUDJ |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 53_W | 59_S | 4.76 | 1.00 | |
| 14_A | 17_K | 3.449 | 1.00 | |
| 22_E | 103_C | 3.407 | 1.00 | |
| 38_L | 47_A | 2.924 | 1.00 | |
| 17_K | 108_S | 2.771 | 1.00 | |
| 43_T | 46_E | 2.708 | 1.00 | |
| 108_S | 111_E | 2.549 | 1.00 | |
| 10_C | 48_A | 2.407 | 1.00 | |
| 63_Q | 87_E | 2.374 | 1.00 | |
| 61_Q | 87_E | 2.115 | 1.00 | |
| 10_C | 86_I | 2.063 | 1.00 | |
| 69_H | 129_C | 2.054 | 1.00 | |
| 22_E | 102_D | 1.985 | 1.00 | |
| 8_V | 47_A | 1.954 | 1.00 | |
| 59_S | 90_Q | 1.951 | 1.00 | |
| 20_V | 107_V | 1.936 | 1.00 | |
| 12_V | 52_L | 1.85 | 1.00 | |
| 65_F | 82_F | 1.831 | 1.00 | |
| 24_T | 102_D | 1.776 | 1.00 | |
| 44_L | 84_F | 1.766 | 1.00 | |
| 31_W | 105_R | 1.725 | 1.00 | |
| 52_L | 60_A | 1.701 | 1.00 | |
| 60_A | 86_I | 1.7 | 1.00 | |
| 49_A | 53_W | 1.642 | 1.00 | |
| 107_V | 115_A | 1.595 | 1.00 | |
| 58_I | 88_L | 1.558 | 1.00 | |
| 124_A | 128_R | 1.556 | 1.00 | |
| 10_C | 52_L | 1.525 | 1.00 | |
| 67_R | 129_C | 1.515 | 1.00 | |
| 65_F | 68_M | 1.498 | 1.00 | |
| 6_V | 38_L | 1.496 | 1.00 | |
| 70_Q | 78_P | 1.431 | 1.00 | |
| 21_V | 101_I | 1.401 | 0.99 | |
| 16_G | 109_A | 1.383 | 0.99 | |
| 107_V | 113_L | 1.369 | 0.99 | |
| 13_H | 85_A | 1.356 | 0.99 | |
| 20_V | 117_N | 1.342 | 0.99 | |
| 46_E | 49_A | 1.306 | 0.99 | |
| 111_E | 114_Q | 1.3 | 0.99 | |
| 20_V | 115_A | 1.297 | 0.99 | |
| 38_L | 44_L | 1.294 | 0.99 | |
| 19_L | 106_W | 1.274 | 0.99 | |
| 109_A | 131_Q | 1.267 | 0.99 | |
| 42_E | 50_R | 1.26 | 0.99 | |
| 52_L | 86_I | 1.237 | 0.98 | |
| 19_L | 104_C | 1.203 | 0.98 | |
| 13_H | 130_Y | 1.132 | 0.97 | |
| 6_V | 80_L | 1.111 | 0.96 | |
| 44_L | 82_F | 1.105 | 0.96 | |
| 13_H | 87_E | 1.096 | 0.96 | |
| 128_R | 132_S | 1.084 | 0.96 | |
| 49_A | 61_Q | 1.084 | 0.96 | |
| 11_V | 126_S | 1.079 | 0.95 | |
| 23_E | 101_I | 1.059 | 0.95 | |
| 49_A | 60_A | 1.052 | 0.95 | |
| 49_A | 62_P | 1.045 | 0.94 | |
| 37_H | 79_F | 1.018 | 0.93 | |
| 83_L | 126_S | 1.014 | 0.93 | |
| 11_V | 130_Y | 1.011 | 0.93 | |
| 8_V | 48_A | 1.009 | 0.93 | |
| 38_L | 80_L | 1.007 | 0.93 | |
| 112_I | 127_I | 1.007 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3shdA | 12 | 1 | 100 | 0.313 | Contact Map | 0.828 |
| 2b0vA | 1 | 0.9608 | 99.9 | 0.398 | Contact Map | 0.773 |
| 3fk9A | 2 | 0.9542 | 99.9 | 0.408 | Contact Map | 0.685 |
| 2qjtB | 2 | 0.8889 | 99.9 | 0.416 | Contact Map | 0.66 |
| 2qjoA | 3 | 0.8627 | 99.9 | 0.417 | Contact Map | 0.587 |
| 3q93A | 2 | 0.9673 | 99.9 | 0.418 | Contact Map | 0.715 |
| 3gwyA | 2 | 0.8824 | 99.9 | 0.419 | Contact Map | 0.788 |
| 2pbtA | 4 | 0.8497 | 99.9 | 0.422 | Contact Map | 0.853 |
| 4dywA | 2 | 0.8562 | 99.9 | 0.429 | Contact Map | 0.74 |
| 3cngA | 4 | 0.9542 | 99.9 | 0.43 | Contact Map | 0.8 |
Sequence Conservation (Image Generated using WebLogo v3)