| UniProt: | P77788 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14009 | ||
| Length: | 135 (127) | ||
| Sequences: | 4952 | ||
| Seq/Len: | 38.99 |
| NUDG
Paralog alert: 0.73 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: GMM MUTT NUDG NUDJ |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 54_R | 60_E | 4.493 | 1.00 | |
| 13_R | 16_K | 3.814 | 1.00 | |
| 21_Q | 100_A | 3.133 | 1.00 | |
| 39_V | 48_A | 3.125 | 1.00 | |
| 16_K | 105_S | 2.719 | 1.00 | |
| 44_S | 47_Q | 2.67 | 1.00 | |
| 19_L | 104_C | 2.308 | 1.00 | |
| 105_S | 108_E | 2.198 | 1.00 | |
| 21_Q | 99_Q | 2.033 | 1.00 | |
| 62_T | 87_P | 2.022 | 1.00 | |
| 104_C | 112_Y | 2.006 | 1.00 | |
| 64_G | 87_P | 2.005 | 1.00 | |
| 11_I | 53_L | 1.93 | 1.00 | |
| 45_Q | 84_W | 1.909 | 1.00 | |
| 53_L | 61_A | 1.879 | 1.00 | |
| 66_Y | 82_H | 1.832 | 1.00 | |
| 60_E | 90_H | 1.814 | 1.00 | |
| 9_A | 86_V | 1.788 | 1.00 | |
| 50_V | 54_R | 1.709 | 1.00 | |
| 32_W | 102_V | 1.632 | 1.00 | |
| 12_E | 85_H | 1.626 | 1.00 | |
| 61_A | 86_V | 1.534 | 1.00 | |
| 43_E | 51_R | 1.525 | 1.00 | |
| 9_A | 49_L | 1.485 | 1.00 | |
| 19_L | 112_Y | 1.474 | 1.00 | |
| 50_V | 61_A | 1.426 | 1.00 | |
| 23_P | 26_S | 1.414 | 1.00 | |
| 66_Y | 69_S | 1.388 | 0.99 | |
| 71_Q | 78_I | 1.385 | 0.99 | |
| 69_S | 82_H | 1.383 | 0.99 | |
| 23_P | 99_Q | 1.38 | 0.99 | |
| 39_V | 45_Q | 1.37 | 0.99 | |
| 59_I | 88_D | 1.358 | 0.99 | |
| 20_A | 98_H | 1.351 | 0.99 | |
| 31_L | 113_P | 1.349 | 0.99 | |
| 68_A | 124_A | 1.34 | 0.99 | |
| 18_L | 101_L | 1.33 | 0.99 | |
| 108_E | 111_Q | 1.314 | 0.99 | |
| 19_L | 114_L | 1.308 | 0.99 | |
| 5_E | 80_H | 1.287 | 0.99 | |
| 47_Q | 50_V | 1.283 | 0.99 | |
| 45_Q | 82_H | 1.272 | 0.99 | |
| 104_C | 110_L | 1.261 | 0.99 | |
| 5_E | 82_H | 1.245 | 0.98 | |
| 9_A | 53_L | 1.24 | 0.98 | |
| 15_G | 106_P | 1.214 | 0.98 | |
| 7_V | 49_L | 1.206 | 0.98 | |
| 119_I | 123_E | 1.195 | 0.98 | |
| 21_Q | 30_G | 1.195 | 0.98 | |
| 50_V | 63_V | 1.18 | 0.98 | |
| 25_Q | 29_A | 1.174 | 0.98 | |
| 53_L | 86_V | 1.16 | 0.97 | |
| 95_A | 98_H | 1.147 | 0.97 | |
| 49_L | 53_L | 1.127 | 0.97 | |
| 7_V | 48_A | 1.121 | 0.97 | |
| 46_R | 50_V | 1.107 | 0.96 | |
| 67_V | 85_H | 1.097 | 0.96 | |
| 20_A | 101_L | 1.096 | 0.96 | |
| 43_E | 48_A | 1.048 | 0.94 | |
| 8_A | 83_A | 1.029 | 0.94 | |
| 71_Q | 80_H | 1.003 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2rrkA | 1 | 1 | 99.9 | 0.223 | Contact Map | 0.779 |
| 3gwyA | 2 | 1 | 99.9 | 0.251 | Contact Map | 0.814 |
| 1mutA | 1 | 0.9481 | 99.9 | 0.261 | Contact Map | 0.316 |
| 3fk9A | 2 | 0.9704 | 99.9 | 0.283 | Contact Map | 0.733 |
| 3eesA | 2 | 1 | 99.9 | 0.292 | Contact Map | 0.782 |
| 2pbtA | 4 | 0.9556 | 99.9 | 0.295 | Contact Map | 0.84 |
| 1x51A | 1 | 0.9926 | 99.9 | 0.301 | Contact Map | 0.552 |
| 3r03A | 2 | 1 | 99.9 | 0.301 | Contact Map | 0.709 |
| 3hhjA | 2 | 0.963 | 99.9 | 0.302 | Contact Map | 0.771 |
| 3fspA | 1 | 0.9704 | 99.9 | 0.304 | Contact Map | 0.521 |
Sequence Conservation (Image Generated using WebLogo v3)