May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DPPC - KDGK
UniProt: P0AEG1 - P37647
Length: 609
Sequences: 596
Seq/Len: 1.05
I_Prob: 0.00

DPPC - Dipeptide transport system permease protein DppC
Paralog alert: 0.76 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
KDGK - 2-dehydro-3-deoxygluconokinase
Paralog alert: 0.85 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: FRLD K1PF K6PF2 KDGK PSUK RBSK YDJH YEGV YEII YIHV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
38_Y 217_T 0.87 0.00
235_A 71_N 0.85 0.00
125_Y 269_G 0.83 0.00
52_I 124_E 0.81 0.00
113_L 287_G 0.81 0.00
47_I 117_Q 0.81 0.00
124_G 226_V 0.78 0.00
80_L 272_A 0.77 0.00
242_M 5_I 0.76 0.00
269_V 152_L 0.75 0.00
43_L 282_D 0.74 0.00
105_G 196_L 0.74 0.00
182_A 72_V 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0502 seconds.