May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NAGK - POTA
UniProt: P75959 - P69874
Length: 681
Sequences: 609
Seq/Len: 0.93
I_Prob: 0.00

NAGK - N-acetyl-D-glucosamine kinase
Paralog alert: 0.80 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ALSK MAK MLC NAGC NAGK NANK YPHH
POTA - Spermidine/putrescine import ATP-binding protein PotA
Paralog alert: 0.82 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
137_G 294_L 0.91 0.00
83_A 201_F 0.85 0.00
284_R 292_V 0.84 0.00
21_R 190_L 0.82 0.00
18_D 122_A 0.79 0.00
126_M 218_I 0.79 0.00
7_I 40_I 0.79 0.00
250_V 120_P 0.78 0.00
118_E 221_M 0.76 0.00
110_A 162_V 0.76 0.00
137_G 313_L 0.74 0.00
16_V 181_K 0.73 0.00
250_V 301_V 0.73 0.00
267_D 74_I 0.72 0.00
71_E 112_F 0.72 0.00
45_E 299_L 0.71 0.00
69_E 107_F 0.71 0.00
210_E 127_R 0.71 0.00
282_I 254_F 0.71 0.00
102_L 77_D 0.70 0.00
99_D 221_M 0.70 0.00
62_I 313_L 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1343 seconds.