May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

POTG - YBJI
UniProt: P31134 - P75809
Length: 648
Sequences: 460
Seq/Len: 0.74
I_Prob: 0.00

POTG - Putrescine transport ATP-binding protein PotG
Paralog alert: 0.82 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
YBJI - Flavin mononucleotide phosphatase YbjI
Paralog alert: 0.75 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: COF MPGP SUPH YBHA YBJI YIDA YIGL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
25_L 139_F 0.92 0.00
25_L 216_G 0.88 0.00
223_M 255_V 0.83 0.00
80_G 165_L 0.82 0.00
192_V 15_L 0.76 0.00
204_V 250_N 0.76 0.00
326_L 4_K 0.75 0.00
229_V 92_V 0.75 0.00
107_T 70_G 0.75 0.00
72_S 239_V 0.74 0.00
47_I 96_L 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1088 seconds.