| UniProt: | P27848 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11470 | ||
| Length: | 266 (262) | ||
| Sequences: | 5550 | ||
| Seq/Len: | 21.18 |
| YIGL
Paralog alert: 0.75 [within 20: 0.19] - ratio of genomes with paralogs Cluster includes: COF MPGP SUPH YBHA YBJI YIDA YIGL |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 16_P | 252_A | 4.609 | 1.00 | |
| 249_G | 258_H | 4.079 | 1.00 | |
| 250_T | 253_D | 3.364 | 1.00 | |
| 211_A | 225_A | 3.356 | 1.00 | |
| 222_L | 228_G | 3.156 | 1.00 | |
| 23_Y | 261_R | 2.905 | 1.00 | |
| 15_S | 19_T | 2.794 | 1.00 | |
| 199_A | 209_C | 2.79 | 1.00 | |
| 3_Q | 208_D | 2.766 | 1.00 | |
| 7_S | 38_F | 2.647 | 1.00 | |
| 23_Y | 254_D | 2.639 | 1.00 | |
| 42_T | 49_V | 2.622 | 1.00 | |
| 236_Q | 240_D | 2.61 | 1.00 | |
| 21_S | 254_D | 2.521 | 1.00 | |
| 219_A | 238_L | 2.497 | 1.00 | |
| 6_A | 195_L | 2.297 | 1.00 | |
| 190_S | 220_E | 2.249 | 1.00 | |
| 30_L | 33_A | 2.22 | 1.00 | |
| 249_G | 253_D | 2.213 | 1.00 | |
| 238_L | 241_L | 2.208 | 1.00 | |
| 219_A | 241_L | 2.108 | 1.00 | |
| 25_K | 55_N | 2.075 | 1.00 | |
| 4_V | 39_V | 2.068 | 1.00 | |
| 206_L | 224_M | 2.066 | 1.00 | |
| 230_I | 242_H | 2.063 | 1.00 | |
| 22_P | 26_E | 2.058 | 1.00 | |
| 196_E | 224_M | 2.047 | 1.00 | |
| 223_S | 241_L | 2.028 | 1.00 | |
| 205_S | 208_D | 2.021 | 1.00 | |
| 216_M | 237_R | 2 | 1.00 | |
| 236_Q | 239_K | 1.98 | 1.00 | |
| 228_G | 243_P | 1.933 | 1.00 | |
| 229_C | 259_Y | 1.874 | 1.00 | |
| 197_A | 200_K | 1.843 | 1.00 | |
| 216_M | 235_H | 1.804 | 1.00 | |
| 30_L | 261_R | 1.801 | 1.00 | |
| 28_L | 38_F | 1.753 | 1.00 | |
| 30_L | 34_R | 1.752 | 1.00 | |
| 211_A | 222_L | 1.725 | 1.00 | |
| 196_E | 200_K | 1.705 | 1.00 | |
| 9_L | 14_L | 1.652 | 1.00 | |
| 193_H | 196_E | 1.65 | 1.00 | |
| 84_D | 87_I | 1.639 | 1.00 | |
| 6_A | 41_A | 1.625 | 1.00 | |
| 2_Y | 210_I | 1.619 | 1.00 | |
| 232_G | 250_T | 1.582 | 1.00 | |
| 7_S | 212_F | 1.571 | 1.00 | |
| 63_I | 194_A | 1.552 | 1.00 | |
| 5_V | 260_L | 1.53 | 1.00 | |
| 227_K | 243_P | 1.49 | 1.00 | |
| 230_I | 234_A | 1.477 | 1.00 | |
| 21_S | 24_A | 1.464 | 1.00 | |
| 207_K | 226_G | 1.443 | 1.00 | |
| 192_G | 224_M | 1.442 | 1.00 | |
| 244_E | 263_L | 1.441 | 1.00 | |
| 256_V | 260_L | 1.426 | 1.00 | |
| 248_I | 255_A | 1.411 | 1.00 | |
| 227_K | 244_E | 1.408 | 1.00 | |
| 26_E | 30_L | 1.397 | 0.99 | |
| 195_L | 221_M | 1.391 | 0.99 | |
| 31_L | 36_I | 1.386 | 0.99 | |
| 5_V | 31_L | 1.376 | 0.99 | |
| 79_F | 197_A | 1.375 | 0.99 | |
| 212_F | 256_V | 1.348 | 0.99 | |
| 15_S | 252_A | 1.34 | 0.99 | |
| 225_A | 228_G | 1.339 | 0.99 | |
| 29_K | 33_A | 1.338 | 0.99 | |
| 4_V | 199_A | 1.329 | 0.99 | |
| 37_N | 202_L | 1.321 | 0.99 | |
| 90_D | 171_R | 1.321 | 0.99 | |
| 199_A | 206_L | 1.318 | 0.99 | |
| 4_V | 204_Y | 1.317 | 0.99 | |
| 199_A | 204_Y | 1.296 | 0.99 | |
| 135_E | 138_L | 1.281 | 0.99 | |
| 27_T | 257_P | 1.28 | 0.99 | |
| 211_A | 221_M | 1.273 | 0.99 | |
| 72_D | 76_N | 1.266 | 0.99 | |
| 222_L | 238_L | 1.262 | 0.99 | |
| 2_Y | 227_K | 1.251 | 0.99 | |
| 42_T | 64_T | 1.249 | 0.99 | |
| 212_F | 259_Y | 1.247 | 0.99 | |
| 237_R | 240_D | 1.244 | 0.98 | |
| 39_V | 198_V | 1.24 | 0.98 | |
| 24_A | 254_D | 1.239 | 0.98 | |
| 2_Y | 36_I | 1.238 | 0.98 | |
| 219_A | 223_S | 1.229 | 0.98 | |
| 32_T | 59_K | 1.227 | 0.98 | |
| 23_Y | 27_T | 1.215 | 0.98 | |
| 16_P | 251_N | 1.209 | 0.98 | |
| 229_C | 248_I | 1.208 | 0.98 | |
| 248_I | 259_Y | 1.207 | 0.98 | |
| 234_A | 239_K | 1.206 | 0.98 | |
| 2_Y | 208_D | 1.198 | 0.98 | |
| 234_A | 238_L | 1.198 | 0.98 | |
| 36_I | 210_I | 1.195 | 0.98 | |
| 206_L | 209_C | 1.185 | 0.98 | |
| 210_I | 259_Y | 1.183 | 0.98 | |
| 197_A | 201_K | 1.179 | 0.98 | |
| 233_S | 251_N | 1.179 | 0.98 | |
| 23_Y | 258_H | 1.172 | 0.98 | |
| 186_A | 189_V | 1.165 | 0.97 | |
| 244_E | 248_I | 1.164 | 0.97 | |
| 244_E | 259_Y | 1.155 | 0.97 | |
| 161_E | 165_N | 1.15 | 0.97 | |
| 210_I | 229_C | 1.144 | 0.97 | |
| 25_K | 29_K | 1.141 | 0.97 | |
| 87_I | 171_R | 1.139 | 0.97 | |
| 173_N | 188_G | 1.133 | 0.97 | |
| 175_S | 185_M | 1.132 | 0.97 | |
| 81_H | 197_A | 1.115 | 0.96 | |
| 87_I | 90_D | 1.114 | 0.96 | |
| 68_A | 186_A | 1.113 | 0.96 | |
| 173_N | 220_E | 1.106 | 0.96 | |
| 6_A | 39_V | 1.103 | 0.96 | |
| 95_V | 149_F | 1.098 | 0.96 | |
| 230_I | 238_L | 1.087 | 0.96 | |
| 4_V | 209_C | 1.084 | 0.96 | |
| 228_G | 238_L | 1.073 | 0.95 | |
| 5_V | 36_I | 1.067 | 0.95 | |
| 249_G | 255_A | 1.057 | 0.95 | |
| 215_G | 235_H | 1.049 | 0.94 | |
| 192_G | 220_E | 1.036 | 0.94 | |
| 87_I | 172_V | 1.035 | 0.94 | |
| 239_K | 247_V | 1.031 | 0.94 | |
| 77_L | 80_A | 1.031 | 0.94 | |
| 6_A | 209_C | 1.028 | 0.94 | |
| 210_I | 263_L | 1.026 | 0.94 | |
| 68_A | 189_V | 1.017 | 0.93 | |
| 190_S | 193_H | 1.015 | 0.93 | |
| 185_M | 190_S | 1.011 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3pgvA | 4 | 1 | 100 | 0.127 | Contact Map | 0.782 |
| 1nrwA | 1 | 0.9737 | 100 | 0.17 | Contact Map | 0.806 |
| 3l7yA | 1 | 0.985 | 100 | 0.192 | Contact Map | 0.788 |
| 1nf2A | 3 | 0.9812 | 100 | 0.195 | Contact Map | 0.853 |
| 1rkqA | 2 | 0.985 | 100 | 0.196 | Contact Map | 0.826 |
| 2b30A | 4 | 0.9812 | 100 | 0.196 | Contact Map | 0.766 |
| 3daoA | 2 | 0.9737 | 100 | 0.202 | Contact Map | 0.761 |
| 2rbkA | 1 | 0.9586 | 100 | 0.212 | Contact Map | 0.754 |
| 1rlmA | 4 | 0.9812 | 100 | 0.217 | Contact Map | 0.849 |
| 3dnpA | 1 | 0.9812 | 100 | 0.221 | Contact Map | 0.811 |
Sequence Conservation (Image Generated using WebLogo v3)