| UniProt: | P0A8Y5 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11195 | ||
| Length: | 270 (268) | ||
| Sequences: | 5652 | ||
| Seq/Len: | 21.09 |
| YIDA
Paralog alert: 0.74 [within 20: 0.18] - ratio of genomes with paralogs Cluster includes: COF MPGP SUPH YBHA YBJI YIDA YIGL |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 17_P | 256_L | 4.654 | 1.00 | |
| 253_K | 262_F | 4.122 | 1.00 | |
| 217_A | 231_A | 3.379 | 1.00 | |
| 254_S | 257_E | 3.346 | 1.00 | |
| 228_I | 234_G | 3.208 | 1.00 | |
| 4_K | 214_E | 2.878 | 1.00 | |
| 24_A | 265_E | 2.878 | 1.00 | |
| 16_L | 20_T | 2.815 | 1.00 | |
| 205_A | 215_I | 2.794 | 1.00 | |
| 24_A | 258_D | 2.725 | 1.00 | |
| 8_I | 39_V | 2.674 | 1.00 | |
| 43_T | 50_V | 2.665 | 1.00 | |
| 242_P | 246_E | 2.61 | 1.00 | |
| 22_S | 258_D | 2.514 | 1.00 | |
| 225_I | 244_V | 2.488 | 1.00 | |
| 7_A | 201_V | 2.364 | 1.00 | |
| 253_K | 257_E | 2.302 | 1.00 | |
| 31_A | 34_A | 2.302 | 1.00 | |
| 196_N | 226_A | 2.258 | 1.00 | |
| 244_V | 247_V | 2.155 | 1.00 | |
| 236_A | 248_A | 2.14 | 1.00 | |
| 225_I | 247_V | 2.1 | 1.00 | |
| 5_L | 40_V | 2.087 | 1.00 | |
| 23_P | 27_N | 2.068 | 1.00 | |
| 26_K | 56_E | 2.061 | 1.00 | |
| 211_K | 214_E | 2.059 | 1.00 | |
| 212_P | 230_Y | 2.044 | 1.00 | |
| 202_K | 230_Y | 2.034 | 1.00 | |
| 235_V | 263_A | 2.016 | 1.00 | |
| 222_E | 243_S | 2.007 | 1.00 | |
| 229_E | 247_V | 1.971 | 1.00 | |
| 31_A | 265_E | 1.929 | 1.00 | |
| 242_P | 245_K | 1.887 | 1.00 | |
| 29_I | 39_V | 1.83 | 1.00 | |
| 222_E | 241_I | 1.804 | 1.00 | |
| 203_S | 206_D | 1.803 | 1.00 | |
| 234_G | 249_N | 1.785 | 1.00 | |
| 217_A | 228_I | 1.768 | 1.00 | |
| 31_A | 35_R | 1.737 | 1.00 | |
| 89_S | 92_D | 1.735 | 1.00 | |
| 202_K | 206_D | 1.7 | 1.00 | |
| 199_T | 202_K | 1.676 | 1.00 | |
| 67_I | 200_G | 1.671 | 1.00 | |
| 10_M | 15_L | 1.658 | 1.00 | |
| 3_I | 216_M | 1.651 | 1.00 | |
| 7_A | 42_T | 1.609 | 1.00 | |
| 8_I | 218_I | 1.606 | 1.00 | |
| 238_D | 254_S | 1.562 | 1.00 | |
| 236_A | 240_A | 1.543 | 1.00 | |
| 233_V | 249_N | 1.528 | 1.00 | |
| 250_F | 267_Y | 1.521 | 1.00 | |
| 76_K | 79_D | 1.5 | 1.00 | |
| 27_N | 31_A | 1.484 | 1.00 | |
| 84_A | 203_S | 1.483 | 1.00 | |
| 213_E | 232_G | 1.471 | 1.00 | |
| 233_V | 250_F | 1.468 | 1.00 | |
| 6_I | 264_I | 1.447 | 1.00 | |
| 198_G | 230_Y | 1.44 | 1.00 | |
| 252_T | 259_G | 1.426 | 1.00 | |
| 6_I | 32_A | 1.421 | 1.00 | |
| 205_A | 212_P | 1.417 | 1.00 | |
| 22_S | 25_V | 1.407 | 0.99 | |
| 38_N | 208_L | 1.402 | 0.99 | |
| 260_V | 264_I | 1.398 | 0.99 | |
| 231_A | 234_G | 1.394 | 0.99 | |
| 32_A | 37_V | 1.378 | 0.99 | |
| 205_A | 210_I | 1.377 | 0.99 | |
| 16_L | 256_L | 1.374 | 0.99 | |
| 218_I | 260_V | 1.369 | 0.99 | |
| 217_A | 227_M | 1.36 | 0.99 | |
| 201_V | 227_M | 1.353 | 0.99 | |
| 5_L | 210_I | 1.337 | 0.99 | |
| 3_I | 233_V | 1.334 | 0.99 | |
| 141_E | 144_K | 1.316 | 0.99 | |
| 3_I | 37_V | 1.316 | 0.99 | |
| 43_T | 68_T | 1.291 | 0.99 | |
| 30_A | 34_A | 1.282 | 0.99 | |
| 240_A | 245_K | 1.282 | 0.99 | |
| 216_M | 263_A | 1.281 | 0.99 | |
| 218_I | 263_A | 1.276 | 0.99 | |
| 5_L | 205_A | 1.276 | 0.99 | |
| 28_A | 261_A | 1.27 | 0.99 | |
| 76_K | 81_S | 1.269 | 0.99 | |
| 252_T | 263_A | 1.266 | 0.99 | |
| 3_I | 214_E | 1.263 | 0.99 | |
| 203_S | 207_V | 1.256 | 0.99 | |
| 216_M | 235_V | 1.247 | 0.99 | |
| 228_I | 244_V | 1.246 | 0.98 | |
| 235_V | 252_T | 1.245 | 0.98 | |
| 243_S | 246_E | 1.239 | 0.98 | |
| 95_F | 177_K | 1.238 | 0.98 | |
| 17_P | 255_N | 1.23 | 0.98 | |
| 25_V | 258_D | 1.22 | 0.98 | |
| 24_A | 28_A | 1.216 | 0.98 | |
| 40_V | 204_L | 1.214 | 0.98 | |
| 240_A | 244_V | 1.208 | 0.98 | |
| 239_N | 255_N | 1.208 | 0.98 | |
| 225_I | 229_E | 1.195 | 0.98 | |
| 250_F | 263_A | 1.189 | 0.98 | |
| 72_A | 192_D | 1.187 | 0.98 | |
| 250_F | 266_K | 1.174 | 0.98 | |
| 5_L | 215_I | 1.174 | 0.98 | |
| 37_V | 216_M | 1.165 | 0.97 | |
| 253_K | 259_G | 1.153 | 0.97 | |
| 92_D | 95_F | 1.147 | 0.97 | |
| 179_T | 226_A | 1.147 | 0.97 | |
| 212_P | 215_I | 1.145 | 0.97 | |
| 216_M | 267_Y | 1.145 | 0.97 | |
| 192_D | 195_V | 1.133 | 0.97 | |
| 24_A | 262_F | 1.133 | 0.97 | |
| 236_A | 244_V | 1.132 | 0.97 | |
| 179_T | 194_R | 1.127 | 0.97 | |
| 26_K | 30_A | 1.12 | 0.96 | |
| 100_S | 156_M | 1.12 | 0.96 | |
| 245_K | 251_V | 1.115 | 0.96 | |
| 86_T | 203_S | 1.107 | 0.96 | |
| 7_A | 215_I | 1.093 | 0.96 | |
| 198_G | 226_A | 1.091 | 0.96 | |
| 181_L | 191_L | 1.09 | 0.96 | |
| 167_I | 171_P | 1.088 | 0.96 | |
| 234_G | 244_V | 1.078 | 0.95 | |
| 250_F | 262_F | 1.051 | 0.94 | |
| 92_D | 177_K | 1.049 | 0.94 | |
| 237_M | 252_T | 1.048 | 0.94 | |
| 7_A | 40_V | 1.044 | 0.94 | |
| 162_I | 165_Q | 1.042 | 0.94 | |
| 221_Q | 241_I | 1.038 | 0.94 | |
| 6_I | 37_V | 1.037 | 0.94 | |
| 86_T | 192_D | 1.023 | 0.93 | |
| 65_Y | 208_L | 1.02 | 0.93 | |
| 215_I | 231_A | 1.019 | 0.93 | |
| 196_N | 199_T | 1.016 | 0.93 | |
| 33_R | 60_E | 1.013 | 0.93 | |
| 205_A | 230_Y | 1.012 | 0.93 | |
| 263_A | 267_Y | 1.012 | 0.93 | |
| 72_A | 195_V | 1.01 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3pgvA | 4 | 0.9741 | 100 | 0.169 | Contact Map | 0.776 |
| 1rkqA | 2 | 1 | 100 | 0.17 | Contact Map | 0.832 |
| 2b30A | 4 | 0.9889 | 100 | 0.185 | Contact Map | 0.763 |
| 1nrwA | 1 | 0.9667 | 100 | 0.188 | Contact Map | 0.806 |
| 3l7yA | 1 | 0.9741 | 100 | 0.193 | Contact Map | 0.785 |
| 3mpoA | 4 | 0.9963 | 100 | 0.204 | Contact Map | 0.857 |
| 1nf2A | 3 | 0.9741 | 100 | 0.21 | Contact Map | 0.862 |
| 1rlmA | 4 | 0.9704 | 100 | 0.212 | Contact Map | 0.847 |
| 3daoA | 2 | 0.9667 | 100 | 0.217 | Contact Map | 0.76 |
| 3dnpA | 1 | 0.9815 | 100 | 0.225 | Contact Map | 0.808 |
Sequence Conservation (Image Generated using WebLogo v3)