May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PSPE - YCJQ
UniProt: P23857 - P76043
Length: 454
Sequences: 437
Seq/Len: 1.04
I_Prob: 0.00

PSPE - Thiosulfate sulfurtransferase PspE
Paralog alert: 0.66 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: GLPE PSPE YIBN
YCJQ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YcjQ
Paralog alert: 0.83 [within 20: 0.37] - ratio of genomes with paralogs
Cluster includes: ACUI ADHP CURA FRMA GATD IDND QOR1 RSPB TDH YAHK YBDR YCJQ YDJJ YDJL YGGP YJGB YJJN YPHC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
37_V 161_V 1.24 0.00
24_I 101_V 1.18 0.00
47_E 2_K 1.04 0.00
31_Q 3_K 1.03 0.00
39_G 163_V 0.91 0.00
24_I 99_Y 0.89 0.00
73_S 175_Q 0.87 0.00
84_G 137_A 0.86 0.00
64_K 347_G 0.86 0.00
48_V 208_N 0.85 0.00
62_T 244_L 0.84 0.00
33_Q 153_A 0.83 0.00
48_V 130_Q 0.83 0.00
76_A 181_G 0.82 0.00
97_I 30_R 0.81 0.00
24_I 327_N 0.81 0.00
85_Y 233_T 0.80 0.00
40_A 100_A 0.79 0.00
23_W 187_G 0.78 0.00
73_S 235_G 0.75 0.00
59_K 203_A 0.75 0.00
64_K 30_R 0.74 0.00
97_I 173_A 0.74 0.00
63_V 17_Y 0.73 0.00
82_E 165_G 0.72 0.00
48_V 254_S 0.72 0.00
29_P 29_I 0.71 0.00
22_H 249_Y 0.71 0.00
24_I 172_I 0.70 0.00
28_V 163_V 0.70 0.00
41_I 31_V 0.70 0.00
97_I 32_R 0.69 0.00
23_W 345_K 0.69 0.00
65_V 239_A 0.69 0.00
24_I 120_V 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.065 seconds.