May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

FADA - PLDB
UniProt: P21151 - P07000
Length: 727
Sequences: 604
Seq/Len: 0.90
I_Prob: 0.00

FADA - 3-ketoacyl-CoA thiolase
Paralog alert: 0.73 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ATOB FADA FADI PAAJ YQEF
PLDB - Lysophospholipase L2
Paralog alert: 0.70 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: BIOH DLHH MENH MHPC PLDB RUTD YBFF YCJY YFHR YGHX YJFP
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
332_I 322_I 1.37 0.00
190_I 265_L 0.89 0.00
323_G 229_P 0.85 0.00
31_S 117_L 0.83 0.00
384_F 77_L 0.80 0.00
45_L 260_T 0.79 0.00
159_G 243_E 0.77 0.00
353_S 264_L 0.76 0.00
45_L 157_D 0.76 0.00
87_V 278_H 0.75 0.00
363_K 318_A 0.73 0.00
217_E 151_R 0.73 0.00
320_K 151_R 0.72 0.00
217_E 87_I 0.71 0.00
223_R 276_R 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.4093 seconds.