| UniProt: | P75736 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11776 | ||
| Length: | 254 (249) | ||
| Sequences: | 23103 | ||
| Seq/Len: | 92.78 |
| YBFF
Paralog alert: 0.80 [within 20: 0.26] - ratio of genomes with paralogs Cluster includes: BIOH DLHH MENH MHPC PLDB RUTD YBFF YCJY YFHR YGHX YJFP |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 84_T | 108_K | 4.234 | 1.00 | |
| 7_A | 44_N | 3.758 | 1.00 | |
| 51_R | 70_D | 3.727 | 1.00 | |
| 35_L | 245_L | 3.087 | 1.00 | |
| 204_G | 230_A | 2.958 | 1.00 | |
| 240_K | 243_A | 2.813 | 1.00 | |
| 199_L | 251_Y | 2.735 | 1.00 | |
| 72_V | 98_L | 2.638 | 1.00 | |
| 82_K | 107_D | 2.609 | 1.00 | |
| 227_H | 247_A | 2.592 | 1.00 | |
| 84_T | 107_D | 2.463 | 1.00 | |
| 112_I | 244_V | 2.437 | 1.00 | |
| 76_D | 105_R | 2.246 | 1.00 | |
| 42_D | 249_R | 2.21 | 1.00 | |
| 229_I | 247_A | 2.14 | 1.00 | |
| 72_V | 102_A | 2.102 | 1.00 | |
| 204_G | 228_V | 2.083 | 1.00 | |
| 218_L | 224_A | 2.065 | 1.00 | |
| 75_L | 83_A | 2.063 | 1.00 | |
| 113_D | 206_S | 2.039 | 1.00 | |
| 98_L | 102_A | 1.988 | 1.00 | |
| 92_G | 114_I | 1.951 | 1.00 | |
| 69_Q | 101_L | 1.926 | 1.00 | |
| 85_F | 95_V | 1.91 | 1.00 | |
| 232_A | 240_K | 1.86 | 1.00 | |
| 99_T | 109_L | 1.842 | 1.00 | |
| 72_V | 76_D | 1.802 | 1.00 | |
| 72_V | 105_R | 1.8 | 1.00 | |
| 198_A | 221_F | 1.797 | 1.00 | |
| 110_V | 248_I | 1.771 | 1.00 | |
| 97_A | 101_L | 1.765 | 1.00 | |
| 211_E | 228_V | 1.753 | 1.00 | |
| 5_I | 74_T | 1.745 | 1.00 | |
| 84_T | 110_V | 1.735 | 1.00 | |
| 95_V | 109_L | 1.731 | 1.00 | |
| 38_D | 245_L | 1.7 | 1.00 | |
| 84_T | 252_L | 1.696 | 1.00 | |
| 2_K | 57_P | 1.686 | 1.00 | |
| 18_P | 44_N | 1.681 | 1.00 | |
| 22_V | 50_M | 1.68 | 1.00 | |
| 18_P | 46_I | 1.672 | 1.00 | |
| 48_V | 71_L | 1.647 | 1.00 | |
| 216_D | 220_Q | 1.64 | 1.00 | |
| 6_R | 29_L | 1.617 | 1.00 | |
| 26_F | 89_S | 1.585 | 1.00 | |
| 4_N | 55_L | 1.555 | 1.00 | |
| 247_A | 250_R | 1.554 | 1.00 | |
| 22_V | 71_L | 1.554 | 1.00 | |
| 36_A | 47_Q | 1.531 | 1.00 | |
| 246_R | 250_R | 1.526 | 1.00 | |
| 71_L | 98_L | 1.523 | 1.00 | |
| 21_L | 86_I | 1.521 | 1.00 | |
| 22_V | 95_V | 1.507 | 1.00 | |
| 46_I | 74_T | 1.506 | 1.00 | |
| 229_I | 232_A | 1.49 | 1.00 | |
| 29_L | 55_L | 1.486 | 1.00 | |
| 65_P | 101_L | 1.464 | 1.00 | |
| 190_K | 193_A | 1.463 | 1.00 | |
| 50_M | 94_A | 1.45 | 1.00 | |
| 102_A | 105_R | 1.444 | 1.00 | |
| 243_A | 247_A | 1.401 | 0.99 | |
| 7_A | 46_I | 1.397 | 0.99 | |
| 111_A | 114_I | 1.397 | 0.99 | |
| 68_A | 97_A | 1.395 | 0.99 | |
| 27_G | 31_N | 1.381 | 0.99 | |
| 38_D | 249_R | 1.366 | 0.99 | |
| 23_H | 53_H | 1.363 | 0.99 | |
| 4_N | 29_L | 1.361 | 0.99 | |
| 98_L | 106_I | 1.356 | 0.99 | |
| 21_L | 45_I | 1.348 | 0.99 | |
| 3_L | 56_S | 1.341 | 0.99 | |
| 199_L | 227_H | 1.337 | 0.99 | |
| 29_L | 49_D | 1.331 | 0.99 | |
| 43_H | 84_T | 1.325 | 0.99 | |
| 110_V | 199_L | 1.319 | 0.99 | |
| 244_V | 248_I | 1.31 | 0.99 | |
| 215_D | 219_A | 1.307 | 0.99 | |
| 17_S | 84_T | 1.3 | 0.99 | |
| 109_L | 198_A | 1.296 | 0.99 | |
| 97_A | 100_A | 1.294 | 0.99 | |
| 80_I | 83_A | 1.29 | 0.99 | |
| 63_N | 66_A | 1.288 | 0.99 | |
| 221_F | 224_A | 1.285 | 0.99 | |
| 20_V | 75_L | 1.281 | 0.99 | |
| 202_P | 214_R | 1.276 | 0.99 | |
| 76_D | 102_A | 1.268 | 0.99 | |
| 18_P | 80_I | 1.26 | 0.99 | |
| 75_L | 80_I | 1.252 | 0.99 | |
| 232_A | 239_E | 1.244 | 0.98 | |
| 201_I | 247_A | 1.227 | 0.98 | |
| 88_H | 237_H | 1.22 | 0.98 | |
| 8_Q | 47_Q | 1.22 | 0.98 | |
| 23_H | 50_M | 1.218 | 0.98 | |
| 48_V | 74_T | 1.208 | 0.98 | |
| 192_P | 220_Q | 1.193 | 0.98 | |
| 98_L | 105_R | 1.192 | 0.98 | |
| 74_T | 78_Q | 1.192 | 0.98 | |
| 232_A | 236_V | 1.191 | 0.98 | |
| 38_D | 41_N | 1.187 | 0.98 | |
| 243_A | 246_R | 1.187 | 0.98 | |
| 96_M | 111_A | 1.182 | 0.98 | |
| 68_A | 94_A | 1.179 | 0.98 | |
| 86_I | 112_I | 1.168 | 0.97 | |
| 9_T | 16_N | 1.162 | 0.97 | |
| 17_S | 107_D | 1.162 | 0.97 | |
| 86_I | 248_I | 1.155 | 0.97 | |
| 211_E | 215_D | 1.15 | 0.97 | |
| 29_L | 47_Q | 1.143 | 0.97 | |
| 20_V | 71_L | 1.141 | 0.97 | |
| 49_D | 54_G | 1.135 | 0.97 | |
| 38_D | 242_D | 1.133 | 0.97 | |
| 204_G | 231_G | 1.124 | 0.97 | |
| 43_H | 253_N | 1.115 | 0.96 | |
| 19_I | 86_I | 1.109 | 0.96 | |
| 215_D | 226_A | 1.107 | 0.96 | |
| 20_V | 83_A | 1.084 | 0.96 | |
| 233_G | 239_E | 1.075 | 0.95 | |
| 201_I | 229_I | 1.073 | 0.95 | |
| 83_A | 106_I | 1.059 | 0.95 | |
| 225_R | 247_A | 1.054 | 0.95 | |
| 242_D | 246_R | 1.05 | 0.94 | |
| 218_L | 226_A | 1.049 | 0.94 | |
| 72_V | 101_L | 1.049 | 0.94 | |
| 19_I | 43_H | 1.04 | 0.94 | |
| 26_F | 53_H | 1.039 | 0.94 | |
| 215_D | 228_V | 1.036 | 0.94 | |
| 100_A | 190_K | 1.035 | 0.94 | |
| 24_G | 89_S | 1.026 | 0.94 | |
| 216_D | 219_A | 1.023 | 0.93 | |
| 202_P | 211_E | 1.019 | 0.93 | |
| 110_V | 252_L | 1.008 | 0.93 | |
| 86_I | 110_V | 1.007 | 0.93 | |
| 202_P | 228_V | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3bf7A | 2 | 1 | 100 | 0.017 | Contact Map | 0.77 |
| 1ehyA | 4 | 0.9724 | 100 | 0.082 | Contact Map | 0.797 |
| 3oosA | 1 | 0.9685 | 100 | 0.087 | Contact Map | 0.711 |
| 3om8A | 2 | 0.9528 | 100 | 0.094 | Contact Map | 0.782 |
| 2pujA | 1 | 0.9606 | 100 | 0.108 | Contact Map | 0.828 |
| 2xuaA | 2 | 0.9646 | 100 | 0.11 | Contact Map | 0.85 |
| 1iupA | 1 | 0.9488 | 100 | 0.113 | Contact Map | 0.816 |
| 1q0rA | 1 | 0.9764 | 100 | 0.118 | Contact Map | 0.799 |
| 2xmzA | 1 | 0.9488 | 100 | 0.119 | Contact Map | 0.728 |
| 1womA | 2 | 0.9685 | 100 | 0.125 | Contact Map | 0.753 |
Sequence Conservation (Image Generated using WebLogo v3)