May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
FNR - PGMB
UniProt: P0A9E5 - P77366
Length: 469
Sequences: 383
Seq/Len: 0.90
I_Prob: 0.00
FNR - Fumarate and nitrate reduction regulatory protein
Paralog alert: 0.76 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: CRP FNR YEIL 		PGMB - Beta-phosphoglucomutase
Paralog alert: 0.91 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: GPH PGMB YFBT YIEH YIGB YIHX YJJG YNIC YQAB YRFG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
61_A 96_P 1.29 0.00
58_L 111_S 1.25 0.00
71_I 10_L 1.06 0.00
148_S 4_Q 0.99 0.00
84_Q 129_E 0.96 0.00
42_L 173_A 0.96 0.00
121_V 28_I 0.95 0.00
63_D 41_N 0.95 0.00
222_G 101_L 0.92 0.00
135_K 164_P 0.91 0.00
53_Q 113_G 0.91 0.00
225_A 156_A 0.91 0.00
58_L 168_I 0.87 0.00
69_Y 188_V 0.86 0.00
207_T 102_L 0.84 0.00
241_Q 170_I 0.84 0.00
97_D 170_I 0.83 0.00
71_I 94_V 0.82 0.00
129_L 113_G 0.81 0.00
129_L 24_A 0.81 0.00
71_I 79_N 0.81 0.00
50_K 170_I 0.80 0.00
110_P 116_S 0.80 0.00
193_L 151_E 0.80 0.00
93_H 29_A 0.79 0.00
40_D 189_G 0.78 0.00
54_K 6_V 0.78 0.00
72_R 98_I 0.78 0.00
50_K 189_G 0.77 0.00
58_L 181_N 0.77 0.00
219_Q 180_I 0.77 0.00
196_T 130_L 0.77 0.00
41_Q 170_I 0.77 0.00
233_I 116_S 0.76 0.00
153_G 116_S 0.76 0.00
224_L 53_L 0.76 0.00
211_I 33_G 0.76 0.00
221_S 69_Q 0.75 0.00
37_H 105_L 0.74 0.00
205_G 116_S 0.74 0.00
231_I 160_L 0.74 0.00
218_F 88_E 0.73 0.00
211_I 116_S 0.73 0.00
231_I 107_A 0.72 0.00
103_A 133_F 0.72 0.00
93_H 130_L 0.71 0.00
37_H 121_A 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1658 seconds.