| UniProt: | P0ADP0 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11202 | ||
| Length: | 238 (228) | ||
| Sequences: | 10411 | ||
| Seq/Len: | 45.66 |
| YIGB
Paralog alert: 0.91 [within 20: 0.12] - ratio of genomes with paralogs Cluster includes: GPH PGMB YFBT YIEH YIGB YIHX YJJG YNIC YQAB YRFG |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 11_S | 182_E | 4.336 | 1.00 | |
| 187_G | 193_D | 3.367 | 1.00 | |
| 197_A | 204_A | 3.177 | 1.00 | |
| 171_L | 175_K | 3.099 | 1.00 | |
| 142_E | 147_G | 2.875 | 1.00 | |
| 198_I | 225_H | 2.774 | 1.00 | |
| 12_A | 178_V | 2.688 | 1.00 | |
| 173_A | 183_I | 2.681 | 1.00 | |
| 161_R | 165_F | 2.68 | 1.00 | |
| 123_K | 149_Y | 2.601 | 1.00 | |
| 130_P | 151_E | 2.557 | 1.00 | |
| 171_L | 174_E | 2.404 | 1.00 | |
| 119_H | 123_K | 2.389 | 1.00 | |
| 229_S | 233_S | 2.275 | 1.00 | |
| 126_A | 151_E | 2.205 | 1.00 | |
| 10_I | 203_Q | 2.183 | 1.00 | |
| 184_L | 205_C | 2.178 | 1.00 | |
| 139_A | 158_P | 2.175 | 1.00 | |
| 194_V | 204_A | 2.138 | 1.00 | |
| 134_I | 168_M | 2.113 | 1.00 | |
| 195_G | 199_R | 2.022 | 1.00 | |
| 118_T | 231_L | 1.988 | 1.00 | |
| 203_Q | 225_H | 1.937 | 1.00 | |
| 179_P | 182_E | 1.931 | 1.00 | |
| 14_T | 134_I | 1.911 | 1.00 | |
| 161_R | 167_D | 1.906 | 1.00 | |
| 131_L | 150_F | 1.892 | 1.00 | |
| 132_V | 152_F | 1.869 | 1.00 | |
| 173_A | 202_M | 1.856 | 1.00 | |
| 15_F | 131_L | 1.789 | 1.00 | |
| 13_L | 129_W | 1.788 | 1.00 | |
| 173_A | 180_I | 1.765 | 1.00 | |
| 13_L | 186_V | 1.759 | 1.00 | |
| 126_A | 149_Y | 1.736 | 1.00 | |
| 12_A | 176_L | 1.731 | 1.00 | |
| 38_F | 100_A | 1.727 | 1.00 | |
| 14_T | 172_A | 1.715 | 1.00 | |
| 152_F | 175_K | 1.663 | 1.00 | |
| 205_C | 228_I | 1.643 | 1.00 | |
| 208_R | 229_S | 1.635 | 1.00 | |
| 124_Q | 235_T | 1.621 | 1.00 | |
| 99_H | 103_I | 1.582 | 1.00 | |
| 178_V | 183_I | 1.573 | 1.00 | |
| 185_H | 197_A | 1.565 | 1.00 | |
| 13_L | 125_L | 1.559 | 1.00 | |
| 230_R | 233_S | 1.515 | 1.00 | |
| 34_E | 104_N | 1.508 | 1.00 | |
| 154_L | 172_A | 1.495 | 1.00 | |
| 17_L | 22_Y | 1.49 | 1.00 | |
| 132_V | 176_L | 1.475 | 1.00 | |
| 117_Q | 120_D | 1.464 | 1.00 | |
| 183_I | 202_M | 1.426 | 1.00 | |
| 114_V | 146_L | 1.398 | 0.99 | |
| 121_T | 235_T | 1.392 | 0.99 | |
| 154_L | 175_K | 1.378 | 0.99 | |
| 100_A | 104_N | 1.372 | 0.99 | |
| 226_L | 237_L | 1.364 | 0.99 | |
| 20_T | 186_V | 1.356 | 0.99 | |
| 14_T | 185_H | 1.34 | 0.99 | |
| 124_Q | 128_K | 1.325 | 0.99 | |
| 205_C | 226_L | 1.323 | 0.99 | |
| 78_R | 81_E | 1.322 | 0.99 | |
| 124_Q | 127_K | 1.316 | 0.99 | |
| 21_L | 118_T | 1.315 | 0.99 | |
| 14_T | 183_I | 1.297 | 0.99 | |
| 139_A | 155_R | 1.278 | 0.99 | |
| 39_V | 100_A | 1.276 | 0.99 | |
| 169_Y | 187_G | 1.274 | 0.99 | |
| 135_T | 155_R | 1.273 | 0.99 | |
| 214_L | 218_W | 1.267 | 0.99 | |
| 38_F | 104_N | 1.249 | 0.99 | |
| 34_E | 38_F | 1.248 | 0.99 | |
| 121_T | 231_L | 1.236 | 0.98 | |
| 125_L | 129_W | 1.232 | 0.98 | |
| 123_K | 127_K | 1.231 | 0.98 | |
| 228_I | 234_L | 1.23 | 0.98 | |
| 120_D | 232_A | 1.225 | 0.98 | |
| 169_Y | 202_M | 1.19 | 0.98 | |
| 18_D | 24_N | 1.189 | 0.98 | |
| 208_R | 227_E | 1.188 | 0.98 | |
| 194_V | 206_W | 1.187 | 0.98 | |
| 73_T | 77_F | 1.183 | 0.98 | |
| 115_P | 209_P | 1.182 | 0.98 | |
| 104_N | 107_K | 1.179 | 0.98 | |
| 169_Y | 185_H | 1.173 | 0.98 | |
| 30_R | 34_E | 1.152 | 0.97 | |
| 198_I | 204_A | 1.145 | 0.97 | |
| 10_I | 184_L | 1.144 | 0.97 | |
| 93_E | 96_A | 1.123 | 0.97 | |
| 194_V | 224_P | 1.119 | 0.96 | |
| 35_A | 39_V | 1.109 | 0.96 | |
| 145_G | 148_D | 1.108 | 0.96 | |
| 114_V | 119_H | 1.105 | 0.96 | |
| 120_D | 123_K | 1.102 | 0.96 | |
| 134_I | 172_A | 1.09 | 0.96 | |
| 117_Q | 230_R | 1.082 | 0.96 | |
| 34_E | 37_T | 1.08 | 0.95 | |
| 96_A | 100_A | 1.077 | 0.95 | |
| 12_A | 130_P | 1.075 | 0.95 | |
| 122_L | 149_Y | 1.058 | 0.95 | |
| 185_H | 202_M | 1.054 | 0.95 | |
| 167_D | 171_L | 1.053 | 0.95 | |
| 117_Q | 121_T | 1.051 | 0.94 | |
| 185_H | 193_D | 1.048 | 0.94 | |
| 17_L | 133_A | 1.039 | 0.94 | |
| 152_F | 176_L | 1.039 | 0.94 | |
| 133_A | 150_F | 1.038 | 0.94 | |
| 169_Y | 196_G | 1.034 | 0.94 | |
| 160_G | 167_D | 1.024 | 0.93 | |
| 123_K | 148_D | 1.019 | 0.93 | |
| 104_N | 108_W | 1.019 | 0.93 | |
| 95_S | 99_H | 1.018 | 0.93 | |
| 20_T | 193_D | 1.018 | 0.93 | |
| 192_T | 195_G | 1.015 | 0.93 | |
| 170_F | 180_I | 1.012 | 0.93 | |
| 22_Y | 144_F | 1.011 | 0.93 | |
| 81_E | 85_L | 1.01 | 0.93 | |
| 166_S | 170_F | 1.01 | 0.93 | |
| 30_R | 33_R | 1.005 | 0.93 | |
| 30_R | 111_R | 1.001 | 0.92 | |
| 190_L | 195_G | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3vayA | 2 | 0.9496 | 100 | 0.304 | Contact Map | 0.825 |
| 4eekA | 1 | 0.8992 | 100 | 0.311 | Contact Map | 0.752 |
| 3s6jA | 6 | 0.8866 | 100 | 0.319 | Contact Map | 0.702 |
| 3ed5A | 1 | 0.9328 | 100 | 0.321 | Contact Map | 0.764 |
| 2om6A | 2 | 0.9244 | 100 | 0.326 | Contact Map | 0.841 |
| 1swvA | 2 | 0.9286 | 100 | 0.328 | Contact Map | 0.817 |
| 3qnmA | 1 | 0.937 | 100 | 0.329 | Contact Map | 0.848 |
| 3qxgA | 2 | 0.895 | 100 | 0.332 | Contact Map | 0.838 |
| 2hdoA | 1 | 0.8529 | 100 | 0.338 | Contact Map | 0.826 |
| 3sd7A | 1 | 0.8908 | 100 | 0.339 | Contact Map | 0.793 |
Sequence Conservation (Image Generated using WebLogo v3)