| UniProt: | P77625 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14104 | ||
| Length: | 216 (204) | ||
| Sequences: | 11366 | ||
| Seq/Len: | 55.72 |
| YFBT
Paralog alert: 0.90 [within 20: 0.13] - ratio of genomes with paralogs Cluster includes: GPH PGMB YFBT YIEH YIGB YIHX YJJG YNIC YQAB YRFG |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 4_K | 157_E | 4.218 | 1.00 | |
| 162_E | 167_G | 3.134 | 1.00 | |
| 146_L | 150_L | 3.076 | 1.00 | |
| 171_G | 178_V | 3.064 | 1.00 | |
| 136_R | 140_E | 2.706 | 1.00 | |
| 172_L | 194_D | 2.588 | 1.00 | |
| 5_G | 153_L | 2.533 | 1.00 | |
| 106_T | 113_A | 2.522 | 1.00 | |
| 148_A | 158_C | 2.487 | 1.00 | |
| 110_M | 114_R | 2.465 | 1.00 | |
| 146_L | 149_Q | 2.452 | 1.00 | |
| 89_I | 93_S | 2.218 | 1.00 | |
| 96_N | 126_E | 2.173 | 1.00 | |
| 101_P | 126_E | 2.172 | 1.00 | |
| 168_V | 178_V | 2.164 | 1.00 | |
| 169_L | 173_A | 2.139 | 1.00 | |
| 198_H | 202_Q | 2.11 | 1.00 | |
| 93_S | 124_A | 2.088 | 1.00 | |
| 105_V | 143_A | 2.064 | 1.00 | |
| 148_A | 176_C | 2.031 | 1.00 | |
| 110_M | 133_R | 2.022 | 1.00 | |
| 159_V | 179_I | 1.979 | 1.00 | |
| 8_F | 102_W | 1.928 | 1.00 | |
| 136_R | 142_D | 1.904 | 1.00 | |
| 3_C | 177_H | 1.903 | 1.00 | |
| 7_L | 105_V | 1.872 | 1.00 | |
| 154_A | 157_E | 1.823 | 1.00 | |
| 103_A | 127_V | 1.783 | 1.00 | |
| 177_H | 194_D | 1.769 | 1.00 | |
| 88_A | 200_L | 1.743 | 1.00 | |
| 160_V | 171_G | 1.742 | 1.00 | |
| 127_V | 150_L | 1.692 | 1.00 | |
| 153_L | 158_C | 1.675 | 1.00 | |
| 6_F | 100_I | 1.665 | 1.00 | |
| 148_A | 155_P | 1.623 | 1.00 | |
| 182_N | 198_H | 1.601 | 1.00 | |
| 5_G | 151_L | 1.6 | 1.00 | |
| 94_H | 98_A | 1.589 | 1.00 | |
| 6_F | 161_V | 1.581 | 1.00 | |
| 50_T | 53_R | 1.58 | 1.00 | |
| 102_W | 125_P | 1.569 | 1.00 | |
| 6_F | 95_L | 1.507 | 1.00 | |
| 7_L | 147_G | 1.505 | 1.00 | |
| 13_T | 161_V | 1.468 | 1.00 | |
| 31_R | 67_E | 1.417 | 1.00 | |
| 96_N | 124_A | 1.41 | 1.00 | |
| 103_A | 151_L | 1.392 | 0.99 | |
| 60_S | 63_D | 1.386 | 0.99 | |
| 14_L | 88_A | 1.359 | 0.99 | |
| 199_S | 202_Q | 1.353 | 0.99 | |
| 10_L | 15_V | 1.35 | 0.99 | |
| 27_N | 31_R | 1.349 | 0.99 | |
| 179_I | 197_L | 1.343 | 0.99 | |
| 165_P | 169_L | 1.337 | 0.99 | |
| 158_C | 176_C | 1.323 | 0.99 | |
| 87_G | 90_A | 1.319 | 0.99 | |
| 11_D | 17_S | 1.264 | 0.99 | |
| 144_Y | 160_V | 1.25 | 0.99 | |
| 77_T | 80_E | 1.231 | 0.98 | |
| 10_L | 113_A | 1.22 | 0.98 | |
| 93_S | 97_K | 1.218 | 0.98 | |
| 129_V | 150_L | 1.197 | 0.98 | |
| 142_D | 146_L | 1.187 | 0.98 | |
| 144_Y | 162_E | 1.183 | 0.98 | |
| 144_Y | 176_C | 1.178 | 0.98 | |
| 90_A | 201_E | 1.177 | 0.98 | |
| 105_V | 147_G | 1.177 | 0.98 | |
| 5_G | 158_C | 1.177 | 0.98 | |
| 129_V | 147_G | 1.175 | 0.98 | |
| 28_W | 32_H | 1.174 | 0.98 | |
| 94_H | 204_T | 1.174 | 0.98 | |
| 7_L | 160_V | 1.159 | 0.97 | |
| 135_K | 142_D | 1.157 | 0.97 | |
| 7_L | 158_C | 1.155 | 0.97 | |
| 179_I | 195_L | 1.151 | 0.97 | |
| 91_L | 200_L | 1.14 | 0.97 | |
| 94_H | 97_K | 1.135 | 0.97 | |
| 160_V | 176_C | 1.13 | 0.97 | |
| 168_V | 180_A | 1.124 | 0.97 | |
| 95_L | 100_I | 1.12 | 0.96 | |
| 90_A | 93_S | 1.116 | 0.96 | |
| 106_T | 130_T | 1.102 | 0.96 | |
| 141_P | 145_L | 1.094 | 0.96 | |
| 114_R | 118_K | 1.092 | 0.96 | |
| 23_R | 27_N | 1.087 | 0.96 | |
| 166_A | 169_L | 1.086 | 0.96 | |
| 161_V | 179_I | 1.068 | 0.95 | |
| 5_G | 101_P | 1.062 | 0.95 | |
| 96_N | 102_W | 1.057 | 0.95 | |
| 84_A | 89_I | 1.05 | 0.94 | |
| 3_C | 159_V | 1.048 | 0.94 | |
| 84_A | 122_L | 1.045 | 0.94 | |
| 23_R | 81_G | 1.045 | 0.94 | |
| 10_L | 104_I | 1.039 | 0.94 | |
| 113_A | 130_T | 1.038 | 0.94 | |
| 197_L | 203_I | 1.031 | 0.94 | |
| 145_L | 155_P | 1.029 | 0.94 | |
| 110_M | 130_T | 1.028 | 0.94 | |
| 31_R | 70_R | 1.016 | 0.93 | |
| 23_R | 26_S | 1.014 | 0.93 | |
| 144_Y | 170_S | 1.01 | 0.93 | |
| 144_Y | 167_G | 1.007 | 0.93 | |
| 49_I | 53_R | 1.005 | 0.93 | |
| 159_V | 177_H | 1.005 | 0.93 | |
| 172_L | 178_V | 1.004 | 0.93 | |
| 26_S | 30_R | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4eekA | 1 | 0.9815 | 100 | 0.294 | Contact Map | 0.77 |
| 2hdoA | 1 | 0.9491 | 100 | 0.296 | Contact Map | 0.836 |
| 4g9bA | 1 | 0.9676 | 100 | 0.307 | Contact Map | 0.788 |
| 1te2A | 2 | 0.9815 | 100 | 0.307 | Contact Map | 0.868 |
| 3l5kA | 1 | 0.9769 | 100 | 0.311 | Contact Map | 0.796 |
| 3iruA | 2 | 1 | 100 | 0.311 | Contact Map | 0.726 |
| 2hi0A | 2 | 0.9722 | 100 | 0.315 | Contact Map | 0.795 |
| 3d6jA | 1 | 0.9907 | 100 | 0.317 | Contact Map | 0.854 |
| 3s6jA | 6 | 1 | 100 | 0.317 | Contact Map | 0.761 |
| 1swvA | 2 | 1 | 100 | 0.317 | Contact Map | 0.848 |
Sequence Conservation (Image Generated using WebLogo v3)