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OPENSEQ.org
YBJS - Uncharacterized protein YbjS
UniProt: P75821 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13688
Length: 337 (330)
Sequences: 24731
Seq/Len: 74.94
YBJS
Paralog alert: 0.90 [within 20: 0.59] - ratio of genomes with paralogs
Cluster includes: FCL GALE GM4D HLDD QOR2 RMLB1 RMLB2 RMLD YBJS YEEZ YFCH YRAR
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
248_K 319_D 3.257 1.00
317_T 320_E 3.16 1.00
8_A 29_A 3.126 1.00
232_Y 309_E 2.977 1.00
214_A 234_I 2.97 1.00
19_F 213_H 2.909 1.00
251_D 319_D 2.878 1.00
2_K 26_S 2.764 1.00
230_R 305_R 2.682 1.00
307_Q 313_Q 2.679 1.00
59_Q 103_A 2.555 1.00
213_H 315_V 2.546 1.00
304_T 308_E 2.527 1.00
88_L 92_R 2.467 1.00
50_A 57_S 2.401 1.00
54_E 57_S 2.385 1.00
69_T 219_S 2.381 1.00
5_V 17_V 2.372 1.00
23_K 220_Q 2.185 1.00
172_F 321_G 2.153 1.00
243_R 247_Q 2.142 1.00
252_E 323_E 2.126 1.00
108_N 162_R 2.057 1.00
19_F 23_K 2.04 1.00
6_T 72_H 2.03 1.00
72_H 111_H 2.008 1.00
4_L 67_I 2.003 1.00
19_F 216_W 2.001 1.00
128_K 131_F 1.998 1.00
248_K 251_D 1.994 1.00
166_L 218_A 1.991 1.00
112_I 215_M 1.989 1.00
244_S 247_Q 1.974 1.00
213_H 217_L 1.962 1.00
241_T 244_S 1.95 1.00
53_T 88_L 1.929 1.00
209_E 324_K 1.926 1.00
71_W 219_S 1.867 1.00
16_A 71_W 1.855 1.00
16_A 212_V 1.817 1.00
30_T 50_A 1.809 1.00
28_R 67_I 1.795 1.00
28_R 46_E 1.765 1.00
192_S 260_R 1.742 1.00
207_Y 324_K 1.74 1.00
2_K 28_R 1.734 1.00
237_G 307_Q 1.73 1.00
327_A 331_D 1.717 1.00
323_E 327_A 1.699 1.00
55_L 99_E 1.694 1.00
113_S 117_L 1.693 1.00
28_R 48_V 1.692 1.00
16_A 73_C 1.677 1.00
168_P 215_M 1.672 1.00
248_K 252_E 1.669 1.00
12_L 171_L 1.663 1.00
118_Y 233_N 1.65 1.00
70_L 101_A 1.647 1.00
68_D 107_R 1.633 1.00
19_F 22_Q 1.625 1.00
320_E 323_E 1.621 1.00
151_I 163_F 1.613 1.00
3_V 25_I 1.612 1.00
166_L 215_M 1.612 1.00
306_A 310_L 1.599 1.00
95_R 99_E 1.582 1.00
216_W 220_Q 1.557 1.00
26_S 46_E 1.551 1.00
71_W 215_M 1.534 1.00
95_R 150_V 1.52 1.00
82_T 85_A 1.52 1.00
185_H 189_H 1.516 1.00
316_I 324_K 1.503 1.00
92_R 95_R 1.498 1.00
72_H 94_T 1.494 1.00
59_Q 100_W 1.47 1.00
145_A 149_E 1.458 1.00
243_R 261_S 1.458 1.00
208_Y 212_V 1.439 1.00
97_L 109_F 1.435 1.00
303_I 307_Q 1.428 1.00
168_P 211_A 1.421 1.00
94_T 147_S 1.418 1.00
18_E 175_H 1.416 1.00
20_L 216_W 1.396 0.99
19_F 212_V 1.392 0.99
14_R 175_H 1.39 0.99
101_A 109_F 1.379 0.99
55_L 96_R 1.368 0.99
207_Y 316_I 1.366 0.99
230_R 309_E 1.359 0.99
129_E 305_R 1.356 0.99
206_T 211_A 1.351 0.99
99_E 102_V 1.346 0.99
17_V 29_A 1.343 0.99
128_K 302_D 1.327 0.99
217_L 221_E 1.322 0.99
11_G 173_G 1.32 0.99
108_N 164_T 1.32 0.99
204_D 237_G 1.319 0.99
207_Y 321_G 1.317 0.99
52_L 93_A 1.309 0.99
25_I 220_Q 1.307 0.99
23_K 216_W 1.298 0.99
87_D 146_A 1.297 0.99
214_A 306_A 1.292 0.99
62_V 65_A 1.288 0.99
213_H 312_Y 1.286 0.99
84_Q 88_L 1.285 0.99
169_Q 301_L 1.263 0.99
320_E 324_K 1.259 0.99
112_I 168_P 1.246 0.98
127_I 131_F 1.245 0.98
303_I 314_P 1.245 0.98
52_L 74_S 1.243 0.98
90_N 143_S 1.243 0.98
8_A 17_V 1.239 0.98
192_S 258_R 1.233 0.98
134_H 145_A 1.232 0.98
55_L 59_Q 1.225 0.98
3_V 69_T 1.218 0.98
142_R 146_A 1.215 0.98
202_L 239_H 1.215 0.98
240_R 318_L 1.21 0.98
99_E 103_A 1.209 0.98
60_A 64_L 1.207 0.98
130_D 305_R 1.204 0.98
152_N 165_I 1.201 0.98
149_E 152_N 1.198 0.98
200_S 243_R 1.189 0.98
167_R 231_V 1.183 0.98
101_A 106_V 1.181 0.98
319_D 323_E 1.171 0.98
111_H 147_S 1.162 0.97
155_S 163_F 1.161 0.97
89_A 93_A 1.157 0.97
152_N 163_F 1.154 0.97
140_F 144_K 1.152 0.97
19_F 209_E 1.151 0.97
200_S 241_T 1.144 0.97
232_Y 305_R 1.144 0.97
217_L 310_L 1.143 0.97
73_C 112_I 1.142 0.97
109_F 151_I 1.142 0.97
186_M 191_G 1.141 0.97
194_L 260_R 1.136 0.97
305_R 309_E 1.135 0.97
250_I 256_D 1.123 0.97
59_Q 104_W 1.116 0.96
152_N 231_V 1.108 0.96
100_W 104_W 1.108 0.96
247_Q 250_I 1.106 0.96
2_K 68_D 1.1 0.96
102_V 158_N 1.098 0.96
252_E 322_I 1.079 0.95
123_H 128_K 1.069 0.95
18_E 22_Q 1.068 0.95
3_V 20_L 1.064 0.95
111_H 151_I 1.058 0.95
64_L 70_L 1.056 0.95
102_V 161_T 1.05 0.94
305_R 308_E 1.05 0.94
162_R 228_S 1.043 0.94
218_A 306_A 1.038 0.94
98_G 109_F 1.034 0.94
6_T 74_S 1.021 0.93
252_E 319_D 1.02 0.93
150_V 153_M 1.017 0.93
87_D 143_S 1.011 0.93
167_R 233_N 1.01 0.93
3_V 71_W 1.006 0.93
11_G 208_Y 1.005 0.93
148_E 167_R 1.004 0.93
21_C 45_A 1.001 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2x4gA10.95251000.197Contact Map0.695
3m2pA60.87831000.205Contact Map0.793
1sb8A10.90211000.209Contact Map0.719
2pzmA20.87241000.215Contact Map0.731
3rufA40.9081000.22Contact Map0.792
1z7eA60.94071000.221Contact Map0.779
2bllA10.94071000.223Contact Map0.767
4id9A20.87241000.224Contact Map0.721
3ko8A10.9111000.225Contact Map0.778
3slgA60.93771000.227Contact Map0.801
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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