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OPENSEQ.org
YNFE - YNFG
UniProt: P77374 - P0AAJ1
Length: 1013
Sequences: 667
Seq/Len: 0.67
I_Prob: 0.92
YNFE - Putative dimethyl sulfoxide reductase chain YnfE
Paralog alert: 0.78 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: BISC DMSA FDHF FDNG FDOG NAPA TORA TORZ YDEP YNFE YNFF 		YNFG - Probable anaerobic dimethyl sulfoxide reductase chain YnfG
Paralog alert: 0.64 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: DMSB HYCB HYDN HYFA NRFC YDHX YDHY YGFS YNFG YSAA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2ivfA:B:BContact Map
2vpzAE:BF:BFContact Map
1kqfA:B:BContact Map
1ti6AKEIGC:BJHDFL:BJHDFLContact Map
1q16A:B:BContact Map
1h0hAK:BL:BLContact Map
3i9v3C:9G:3C:9GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
710_A 25_K 2.40 0.92
203_A 127_D 1.44 0.30
710_A 33_E 1.38 0.25
79_E 132_R 1.32 0.21
77_W 27_F 1.06 0.08
707_L 26_D 1.05 0.08
97_L 19_T 1.05 0.08
713_R 73_P 1.03 0.07
476_L 73_P 1.02 0.07
707_L 25_K 1.00 0.06
732_D 95_D 0.97 0.05
297_E 78_V 0.95 0.05
347_S 16_G 0.94 0.05
474_N 140_I 0.94 0.05
349_I 148_R 0.94 0.05
584_W 149_A 0.94 0.05
256_K 100_I 0.93 0.05
724_Q 95_D 0.93 0.05
295_I 91_F 0.92 0.04
527_D 62_Y 0.90 0.04
275_W 150_L 0.89 0.04
342_T 180_N 0.89 0.04
260_I 156_E 0.89 0.04
434_S 15_T 0.89 0.04
668_P 10_D 0.87 0.03
30_G 54_W 0.86 0.03
707_L 22_L 0.86 0.03
753_I 82_G 0.85 0.03
354_E 19_T 0.85 0.03
100_R 144_S 0.85 0.03
760_M 13_R 0.85 0.03
503_E 102_C 0.84 0.03
758_S 81_S 0.84 0.03
299_L 83_A 0.84 0.03
256_K 121_G 0.84 0.03
70_V 118_A 0.83 0.03
75_V 10_D 0.83 0.03
234_E 132_R 0.83 0.03
509_S 82_G 0.83 0.03
226_V 23_A 0.83 0.03
312_Y 112_G 0.81 0.03
251_E 13_R 0.81 0.03
101_S 25_K 0.81 0.03
465_I 97_D 0.81 0.03
76_T 107_M 0.80 0.03
372_I 19_T 0.80 0.02
495_K 30_L 0.80 0.02
548_S 95_D 0.79 0.02
434_S 117_N 0.79 0.02
104_R 22_L 0.79 0.02
271_R 104_Y 0.79 0.02
718_I 73_P 0.79 0.02
185_Y 1_M 0.79 0.02
256_K 94_V 0.79 0.02
465_I 123_M 0.78 0.02
282_T 71_D 0.78 0.02
611_Y 157_E 0.77 0.02
75_V 123_M 0.77 0.02
560_L 111_Y 0.77 0.02
540_L 91_F 0.77 0.02
700_S 62_Y 0.77 0.02
152_N 7_F 0.76 0.02
19_T 13_R 0.76 0.02
509_S 5_Y 0.76 0.02
626_F 62_Y 0.76 0.02
258_I 72_D 0.76 0.02
361_A 10_D 0.75 0.02
573_Q 88_E 0.75 0.02
181_L 135_E 0.75 0.02
278_I 117_N 0.75 0.02
406_G 19_T 0.74 0.02
80_T 16_G 0.74 0.02
54_G 150_L 0.74 0.02
77_W 33_E 0.74 0.02
28_A 95_D 0.74 0.02
642_I 108_A 0.74 0.02
495_K 164_T 0.74 0.02
469_W 144_S 0.73 0.02
103_R 26_D 0.73 0.02
687_L 163_G 0.73 0.02
330_Y 114_P 0.73 0.02
716_V 91_F 0.72 0.02
162_G 6_G 0.72 0.02
350_T 157_E 0.72 0.02
729_A 161_K 0.72 0.02
397_L 174_A 0.72 0.02
112_L 88_E 0.72 0.02
504_N 130_Y 0.72 0.02
220_E 121_G 0.72 0.02
571_V 6_G 0.72 0.02
178_V 81_S 0.72 0.02
260_I 73_P 0.72 0.02
488_E 72_D 0.71 0.02
769_N 36_F 0.71 0.02
12_R 153_G 0.71 0.02
357_I 35_S 0.71 0.02
802_L 104_Y 0.71 0.01
347_S 134_A 0.71 0.01
363_E 156_E 0.71 0.01
719_N 91_F 0.71 0.01
27_A 78_V 0.71 0.01
658_L 63_L 0.71 0.01
64_C 105_C 0.71 0.01
252_K 105_C 0.70 0.01
555_P 23_A 0.70 0.01
64_C 79_C 0.70 0.01
394_L 113_A 0.70 0.01
642_I 68_N 0.70 0.01
754_L 54_W 0.70 0.01
269_A 147_L 0.70 0.01
482_D 123_M 0.70 0.01
275_W 64_S 0.70 0.01
595_K 13_R 0.70 0.01
96_C 105_C 0.70 0.01
545_P 10_D 0.70 0.01
368_K 114_P 0.70 0.01
736_V 89_D 0.70 0.01
747_A 33_E 0.70 0.01
685_F 88_E 0.70 0.01
43_A 156_E 0.70 0.01
106_I 29_D 0.70 0.01
66_L 86_K 0.70 0.01
219_I 28_K 0.69 0.01
736_V 133_V 0.69 0.01
126_K 113_A 0.69 0.01
384_G 150_L 0.69 0.01
265_T 31_G 0.69 0.01
553_R 8_F 0.69 0.01
115_P 124_T 0.69 0.01
504_N 94_V 0.69 0.01
248_K 101_G 0.69 0.01
114_Y 4_Q 0.69 0.01
73_N 179_P 0.69 0.01
118_R 111_Y 0.69 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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