| UniProt: | P0AAK4 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11552 | ||
| Length: | 175 (167) | ||
| Sequences: | 2200 | ||
| Seq/Len: | 13.17 |
| HYDN
Paralog alert: 0.63 [within 20: 0.30] - ratio of genomes with paralogs Cluster includes: DMSB HYCB HYDN HYFA NRFC YDHX YDHY YGFS YNFG YSAA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 67_A | 75_I | 3.06 | 1.00 | |
| 25_S | 136_H | 2.971 | 1.00 | |
| 93_K | 106_V | 2.615 | 1.00 | |
| 75_I | 84_V | 2.544 | 1.00 | |
| 75_I | 104_M | 2.456 | 1.00 | |
| 144_M | 152_L | 2.355 | 1.00 | |
| 69_V | 98_A | 2.218 | 1.00 | |
| 63_D | 68_N | 2.099 | 1.00 | |
| 96_V | 128_A | 2.067 | 1.00 | |
| 21_A | 146_A | 2.066 | 1.00 | |
| 141_P | 144_M | 1.975 | 1.00 | |
| 104_M | 128_A | 1.974 | 1.00 | |
| 16_R | 19_E | 1.852 | 1.00 | |
| 93_K | 96_V | 1.849 | 1.00 | |
| 137_R | 145_A | 1.846 | 1.00 | |
| 140_G | 145_A | 1.833 | 1.00 | |
| 69_V | 94_T | 1.815 | 1.00 | |
| 13_I | 149_T | 1.774 | 1.00 | |
| 153_I | 163_L | 1.758 | 1.00 | |
| 12_C | 18_C | 1.743 | 1.00 | |
| 26_H | 132_D | 1.731 | 1.00 | |
| 70_C | 89_C | 1.727 | 1.00 | |
| 12_C | 15_C | 1.714 | 1.00 | |
| 81_F | 133_L | 1.706 | 1.00 | |
| 70_C | 95_C | 1.701 | 1.00 | |
| 15_C | 18_C | 1.686 | 1.00 | |
| 76_S | 85_M | 1.653 | 1.00 | |
| 89_C | 95_C | 1.636 | 1.00 | |
| 85_M | 88_R | 1.635 | 1.00 | |
| 159_K | 162_Q | 1.598 | 1.00 | |
| 42_P | 46_V | 1.596 | 1.00 | |
| 106_V | 128_A | 1.55 | 1.00 | |
| 7_A | 152_L | 1.542 | 1.00 | |
| 7_A | 55_A | 1.502 | 1.00 | |
| 163_L | 166_E | 1.471 | 1.00 | |
| 71_P | 90_I | 1.43 | 1.00 | |
| 72_N | 90_I | 1.415 | 1.00 | |
| 162_Q | 165_A | 1.399 | 0.99 | |
| 76_S | 83_H | 1.386 | 0.99 | |
| 70_C | 92_C | 1.385 | 0.99 | |
| 25_S | 137_R | 1.366 | 0.99 | |
| 83_H | 135_N | 1.363 | 0.99 | |
| 12_C | 147_C | 1.361 | 0.99 | |
| 109_R | 125_K | 1.348 | 0.99 | |
| 162_Q | 166_E | 1.342 | 0.99 | |
| 163_L | 167_K | 1.32 | 0.99 | |
| 15_C | 147_C | 1.296 | 0.99 | |
| 140_G | 144_M | 1.296 | 0.99 | |
| 92_C | 95_C | 1.287 | 0.99 | |
| 65_P | 98_A | 1.279 | 0.99 | |
| 89_C | 92_C | 1.273 | 0.99 | |
| 8_D | 11_K | 1.26 | 0.99 | |
| 57_V | 152_L | 1.239 | 0.98 | |
| 41_L | 44_I | 1.22 | 0.98 | |
| 18_C | 147_C | 1.217 | 0.98 | |
| 9_A | 55_A | 1.217 | 0.98 | |
| 93_K | 128_A | 1.216 | 0.98 | |
| 138_E | 154_C | 1.202 | 0.98 | |
| 72_N | 75_I | 1.167 | 0.97 | |
| 40_F | 43_R | 1.163 | 0.97 | |
| 157_R | 161_E | 1.156 | 0.97 | |
| 155_V | 159_K | 1.146 | 0.97 | |
| 14_G | 17_T | 1.144 | 0.97 | |
| 132_D | 136_H | 1.132 | 0.97 | |
| 5_I | 133_L | 1.108 | 0.96 | |
| 64_A | 67_A | 1.103 | 0.96 | |
| 64_A | 77_R | 1.102 | 0.96 | |
| 81_F | 138_E | 1.101 | 0.96 | |
| 11_K | 151_A | 1.1 | 0.96 | |
| 115_S | 120_N | 1.092 | 0.96 | |
| 17_T | 146_A | 1.084 | 0.96 | |
| 86_Q | 127_E | 1.081 | 0.95 | |
| 94_T | 97_V | 1.073 | 0.95 | |
| 106_V | 126_A | 1.063 | 0.95 | |
| 160_L | 163_L | 1.055 | 0.95 | |
| 55_A | 152_L | 1.039 | 0.94 | |
| 20_V | 24_V | 1.032 | 0.94 | |
| 84_V | 128_A | 1.03 | 0.94 | |
| 83_H | 132_D | 1.029 | 0.94 | |
| 107_V | 129_N | 1.026 | 0.94 | |
| 156_D | 159_K | 1.016 | 0.93 | |
| 39_T | 42_P | 1.015 | 0.93 | |
| 108_V | 115_S | 1.014 | 0.93 | |
| 133_L | 154_C | 1.003 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1h0hB | 2 | 0.9086 | 100 | 0.379 | Contact Map | 0.667 |
| 1ti6B | 6 | 0.9086 | 100 | 0.38 | Contact Map | 0.664 |
| 1kqfB | 1 | 0.9143 | 100 | 0.392 | Contact Map | 0.698 |
| 2ivfB | 1 | 0.9143 | 100 | 0.401 | Contact Map | 0.694 |
| 2vpzB | 2 | 0.88 | 100 | 0.434 | Contact Map | 0.692 |
| 1q16B | 1 | 0.9143 | 99.9 | 0.523 | Contact Map | 0.678 |
| 3mm5B | 2 | 0.9143 | 99.7 | 0.648 | Contact Map | 0.247 |
| 1rgvA | 1 | 0.4457 | 99.3 | 0.744 | Contact Map | 0.345 |
| 2fgoA | 1 | 0.4514 | 99.3 | 0.744 | Contact Map | 0.319 |
| 3eunA | 1 | 0.4571 | 99.3 | 0.746 | Contact Map | 0.282 |
Sequence Conservation (Image Generated using WebLogo v3)