May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
GHRA - RUTR
UniProt: P75913 - P0ACU2
Length: 524
Sequences: 719
Seq/Len: 1.44
I_Prob: 0.00
GHRA - Glyoxylate/hydroxypyruvate reductase A
Paralog alert: 0.87 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: GHRA GHRB LDHD SERA 		RUTR - HTH-type transcriptional regulator RutR
Paralog alert: 0.77 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
183_E 44_I 0.94 0.00
191_C 92_A 0.89 0.00
215_K 141_K 0.79 0.00
205_V 55_L 0.75 0.00
103_A 69_V 0.70 0.00
268_P 106_R 0.67 0.00
271_T 55_L 0.67 0.00
231_V 168_A 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1112 seconds.