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CPDA - YDCV
UniProt: P0AEW4 - P0AFR9
Length: 539
Sequences: 304
Seq/Len: 0.61
I_Prob: 0.00

CPDA - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA
Paralog alert: 0.26 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: CPDA
YDCV - Inner membrane ABC transporter permease protein YdcV
Paralog alert: 0.96 [within 20: 0.88] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfG:FContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
59_I 137_V 1.13 0.00
40_E 183_L 1.06 0.00
81_I 82_L 1.05 0.00
47_E 29_A 1.05 0.00
99_P 186_L 1.04 0.00
220_T 69_L 1.03 0.00
101_M 205_I 1.03 0.00
75_Q 173_N 1.03 0.00
55_E 111_L 1.03 0.00
191_A 181_V 1.02 0.00
191_A 77_L 1.02 0.00
23_T 82_L 0.99 0.00
105_L 147_V 0.98 0.00
261_L 87_A 0.97 0.00
75_Q 81_V 0.96 0.00
246_L 96_F 0.95 0.00
61_A 136_I 0.94 0.00
157_R 166_A 0.94 0.00
46_L 217_T 0.94 0.00
199_L 248_L 0.93 0.00
161_L 180_Y 0.92 0.00
17_I 76_T 0.91 0.00
182_N 117_G 0.89 0.00
124_I 44_P 0.89 0.00
153_D 100_A 0.89 0.00
141_E 123_A 0.88 0.00
106_Q 26_L 0.88 0.00
18_L 123_A 0.88 0.00
261_L 80_L 0.88 0.00
183_A 181_V 0.87 0.00
129_S 160_S 0.87 0.00
62_T 252_G 0.87 0.00
182_N 248_L 0.87 0.00
195_H 106_L 0.86 0.00
186_L 202_F 0.86 0.00
42_Y 181_V 0.86 0.00
186_L 29_A 0.85 0.00
160_L 249_P 0.85 0.00
127_L 238_V 0.85 0.00
18_L 141_A 0.85 0.00
60_V 137_V 0.84 0.00
56_F 105_L 0.84 0.00
80_G 32_A 0.84 0.00
82_A 33_F 0.83 0.00
197_K 255_W 0.83 0.00
250_A 54_V 0.83 0.00
20_I 181_V 0.82 0.00
87_P 80_L 0.82 0.00
84_F 80_L 0.82 0.00
184_G 33_F 0.82 0.00
49_I 159_T 0.82 0.00
140_S 97_G 0.82 0.00
105_L 163_L 0.82 0.00
190_L 135_T 0.82 0.00
35_G 82_L 0.82 0.00
148_E 59_S 0.82 0.00
46_L 136_I 0.82 0.00
196_V 167_S 0.81 0.00
145_E 26_L 0.81 0.00
252_G 50_R 0.81 0.00
19_Q 98_K 0.81 0.00
242_G 75_A 0.81 0.00
153_D 16_G 0.81 0.00
103_S 94_D 0.81 0.00
166_H 129_L 0.81 0.00
189_V 86_A 0.81 0.00
189_V 66_T 0.81 0.00
125_L 198_F 0.80 0.00
46_L 56_A 0.80 0.00
60_V 44_P 0.80 0.00
148_E 70_K 0.80 0.00
112_P 248_L 0.80 0.00
186_L 49_L 0.79 0.00
109_G 191_L 0.79 0.00
170_A 111_L 0.79 0.00
59_I 212_A 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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