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OPENSEQ.org
ALLC - HYI
UniProt: P77425 - P30147
Length: 669
Sequences: 432
Seq/Len: 0.67
I_Prob: 0.00
ALLC - Allantoate amidohydrolase
Paralog alert: 0.89 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ABGA ABGB ALLC ARGE DAPE PEPT YGEY 		HYI - Hydroxypyruvate isomerase
Paralog alert: 0.70 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: END4 FRLC HYI SGBU ULAE YCJR YGBM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1q7lAC:BDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
302_L 219_I 1.43 0.00
363_F 177_Y 1.21 0.00
277_V 236_W 1.04 0.00
120_V 80_E 0.94 0.00
279_G 47_H 0.93 0.00
48_A 131_N 0.89 0.00
346_K 5_S 0.87 0.00
307_R 203_L 0.86 0.00
338_L 132_M 0.83 0.00
118_V 28_G 0.82 0.00
76_V 163_K 0.82 0.00
71_Y 97_L 0.81 0.00
41_Q 175_I 0.81 0.00
298_F 45_L 0.80 0.00
338_L 137_D 0.80 0.00
277_V 238_G 0.79 0.00
262_L 116_E 0.79 0.00
42_Q 87_V 0.78 0.00
40_Q 239_C 0.78 0.00
187_V 16_D 0.78 0.00
64_G 171_C 0.78 0.00
48_A 188_E 0.78 0.00
306_M 233_Y 0.77 0.00
269_P 92_R 0.77 0.00
391_T 135_K 0.77 0.00
304_N 46_K 0.77 0.00
205_G 91_I 0.77 0.00
395_E 164_L 0.77 0.00
77_L 116_E 0.77 0.00
340_E 26_Q 0.77 0.00
47_M 4_F 0.77 0.00
331_N 165_I 0.77 0.00
367_V 124_E 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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