| UniProt: | P76044 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13915 | ||
| Length: | 262 (259) | ||
| Sequences: | 5911 | ||
| Seq/Len: | 22.82 |
| YCJR
Paralog alert: 0.70 [within 20: 0.18] - ratio of genomes with paralogs Cluster includes: END4 FRLC HYI SGBU ULAE YCJR YGBM |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 220_D | 223_A | 3.313 | 1.00 | |
| 45_K | 49_K | 3.195 | 1.00 | |
| 208_D | 215_G | 3.159 | 1.00 | |
| 175_Q | 202_G | 3.083 | 1.00 | |
| 86_E | 139_T | 2.96 | 1.00 | |
| 82_E | 135_V | 2.915 | 1.00 | |
| 126_S | 168_E | 2.795 | 1.00 | |
| 20_R | 51_T | 2.794 | 1.00 | |
| 29_G | 236_Y | 2.759 | 1.00 | |
| 86_E | 135_V | 2.747 | 1.00 | |
| 46_A | 50_E | 2.546 | 1.00 | |
| 164_R | 168_E | 2.315 | 1.00 | |
| 142_V | 175_Q | 2.253 | 1.00 | |
| 75_L | 79_K | 2.239 | 1.00 | |
| 195_H | 227_Q | 2.126 | 1.00 | |
| 16_L | 47_A | 2.112 | 1.00 | |
| 134_Q | 171_L | 2.092 | 1.00 | |
| 14_N | 17_E | 2.069 | 1.00 | |
| 20_R | 24_E | 2.059 | 1.00 | |
| 253_R | 257_A | 2.01 | 1.00 | |
| 47_A | 51_T | 2.007 | 1.00 | |
| 189_N | 192_Q | 2.002 | 1.00 | |
| 142_V | 202_G | 1.993 | 1.00 | |
| 89_A | 139_T | 1.947 | 1.00 | |
| 78_L | 131_V | 1.918 | 1.00 | |
| 144_Y | 202_G | 1.904 | 1.00 | |
| 122_R | 164_R | 1.859 | 1.00 | |
| 95_G | 144_Y | 1.839 | 1.00 | |
| 195_H | 230_A | 1.82 | 1.00 | |
| 133_E | 174_V | 1.787 | 1.00 | |
| 123_K | 168_E | 1.785 | 1.00 | |
| 48_I | 55_V | 1.778 | 1.00 | |
| 74_R | 128_S | 1.748 | 1.00 | |
| 120_G | 123_K | 1.744 | 1.00 | |
| 47_A | 50_E | 1.743 | 1.00 | |
| 88_L | 93_G | 1.743 | 1.00 | |
| 135_V | 139_T | 1.65 | 1.00 | |
| 122_R | 168_E | 1.644 | 1.00 | |
| 256_L | 260_R | 1.64 | 1.00 | |
| 227_Q | 230_A | 1.627 | 1.00 | |
| 204_V | 228_L | 1.625 | 1.00 | |
| 163_R | 167_V | 1.624 | 1.00 | |
| 23_K | 51_T | 1.61 | 1.00 | |
| 85_L | 136_A | 1.601 | 1.00 | |
| 83_R | 86_E | 1.586 | 1.00 | |
| 124_M | 127_D | 1.573 | 1.00 | |
| 79_K | 83_R | 1.57 | 1.00 | |
| 226_E | 230_A | 1.566 | 1.00 | |
| 208_D | 217_G | 1.561 | 1.00 | |
| 85_L | 139_T | 1.559 | 1.00 | |
| 16_L | 43_E | 1.516 | 1.00 | |
| 43_E | 46_A | 1.513 | 1.00 | |
| 2_K | 54_P | 1.5 | 1.00 | |
| 42_E | 90_E | 1.495 | 1.00 | |
| 16_L | 50_E | 1.491 | 1.00 | |
| 20_R | 47_A | 1.491 | 1.00 | |
| 40_N | 43_E | 1.488 | 1.00 | |
| 134_Q | 138_R | 1.479 | 1.00 | |
| 41_I | 90_E | 1.452 | 1.00 | |
| 126_S | 130_R | 1.447 | 1.00 | |
| 147_P | 183_M | 1.447 | 1.00 | |
| 137_A | 173_H | 1.445 | 1.00 | |
| 144_Y | 177_I | 1.425 | 1.00 | |
| 19_F | 51_T | 1.415 | 1.00 | |
| 160_A | 196_D | 1.398 | 0.99 | |
| 167_V | 200_L | 1.386 | 0.99 | |
| 133_E | 169_N | 1.383 | 0.99 | |
| 135_V | 138_R | 1.381 | 0.99 | |
| 137_A | 171_L | 1.371 | 0.99 | |
| 78_L | 82_E | 1.367 | 0.99 | |
| 175_Q | 200_L | 1.356 | 0.99 | |
| 22_I | 27_F | 1.348 | 0.99 | |
| 21_Y | 24_E | 1.344 | 0.99 | |
| 27_F | 239_Y | 1.334 | 0.99 | |
| 257_A | 261_T | 1.329 | 0.99 | |
| 46_A | 49_K | 1.304 | 0.99 | |
| 222_H | 226_E | 1.302 | 0.99 | |
| 79_K | 82_E | 1.301 | 0.99 | |
| 247_D | 250_Q | 1.295 | 0.99 | |
| 216_S | 254_D | 1.294 | 0.99 | |
| 130_R | 170_D | 1.285 | 0.99 | |
| 48_I | 53_L | 1.274 | 0.99 | |
| 95_G | 142_V | 1.271 | 0.99 | |
| 42_E | 46_A | 1.265 | 0.99 | |
| 192_Q | 196_D | 1.255 | 0.99 | |
| 82_E | 86_E | 1.255 | 0.99 | |
| 191_A | 223_A | 1.253 | 0.99 | |
| 123_K | 127_D | 1.242 | 0.98 | |
| 73_R | 76_N | 1.241 | 0.98 | |
| 137_A | 172_K | 1.24 | 0.98 | |
| 119_D | 123_K | 1.239 | 0.98 | |
| 127_D | 130_R | 1.221 | 0.98 | |
| 19_F | 47_A | 1.214 | 0.98 | |
| 227_Q | 231_D | 1.212 | 0.98 | |
| 194_L | 227_Q | 1.212 | 0.98 | |
| 81_I | 132_L | 1.212 | 0.98 | |
| 17_E | 20_R | 1.204 | 0.98 | |
| 134_Q | 137_A | 1.203 | 0.98 | |
| 117_S | 120_G | 1.201 | 0.98 | |
| 126_S | 169_N | 1.195 | 0.98 | |
| 43_E | 47_A | 1.194 | 0.98 | |
| 192_Q | 195_H | 1.182 | 0.98 | |
| 82_E | 138_R | 1.181 | 0.98 | |
| 85_L | 135_V | 1.172 | 0.98 | |
| 164_R | 167_V | 1.158 | 0.97 | |
| 163_R | 196_D | 1.155 | 0.97 | |
| 82_E | 131_V | 1.139 | 0.97 | |
| 45_K | 90_E | 1.137 | 0.97 | |
| 27_F | 256_L | 1.137 | 0.97 | |
| 180_F | 224_L | 1.135 | 0.97 | |
| 72_E | 76_N | 1.135 | 0.97 | |
| 88_L | 96_I | 1.135 | 0.97 | |
| 75_L | 131_V | 1.13 | 0.97 | |
| 158_T | 161_D | 1.114 | 0.96 | |
| 86_E | 90_E | 1.113 | 0.96 | |
| 95_G | 202_G | 1.109 | 0.96 | |
| 86_E | 89_A | 1.106 | 0.96 | |
| 21_Y | 249_A | 1.102 | 0.96 | |
| 71_E | 75_L | 1.102 | 0.96 | |
| 162_A | 176_I | 1.102 | 0.96 | |
| 54_P | 94_K | 1.101 | 0.96 | |
| 22_I | 30_F | 1.093 | 0.96 | |
| 178_G | 183_M | 1.077 | 0.95 | |
| 74_R | 127_D | 1.072 | 0.95 | |
| 119_D | 164_R | 1.071 | 0.95 | |
| 23_K | 52_G | 1.07 | 0.95 | |
| 41_I | 91_V | 1.069 | 0.95 | |
| 85_L | 141_T | 1.061 | 0.95 | |
| 223_A | 227_Q | 1.056 | 0.95 | |
| 157_N | 161_D | 1.056 | 0.95 | |
| 25_M | 256_L | 1.054 | 0.95 | |
| 250_Q | 254_D | 1.047 | 0.94 | |
| 136_A | 143_V | 1.043 | 0.94 | |
| 130_R | 171_L | 1.033 | 0.94 | |
| 163_R | 197_N | 1.031 | 0.94 | |
| 131_V | 134_Q | 1.031 | 0.94 | |
| 16_L | 20_R | 1.028 | 0.94 | |
| 194_L | 231_D | 1.018 | 0.93 | |
| 23_K | 28_D | 1.015 | 0.93 | |
| 214_P | 255_S | 1.015 | 0.93 | |
| 198_R | 231_D | 1.011 | 0.93 | |
| 58_A | 88_L | 1.01 | 0.93 | |
| 45_K | 92_G | 1.008 | 0.93 | |
| 176_I | 197_N | 1.007 | 0.93 | |
| 228_L | 231_D | 1.004 | 0.93 | |
| 4_G | 238_V | 1.004 | 0.93 | |
| 20_R | 50_E | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3kwsA | 2 | 0.9733 | 100 | 0.158 | Contact Map | 0.68 |
| 3vylA | 8 | 0.9695 | 100 | 0.171 | Contact Map | 0.722 |
| 2qulA | 4 | 0.9809 | 100 | 0.174 | Contact Map | 0.75 |
| 3vniA | 4 | 0.9771 | 100 | 0.175 | Contact Map | 0.767 |
| 2hk0A | 4 | 0.9771 | 100 | 0.175 | Contact Map | 0.704 |
| 2qw5A | 2 | 0.9618 | 100 | 0.182 | Contact Map | 0.617 |
| 1i60A | 1 | 0.9542 | 100 | 0.184 | Contact Map | 0.67 |
| 1k77A | 1 | 0.9389 | 100 | 0.197 | Contact Map | 0.687 |
| 3qc0A | 1 | 0.9542 | 100 | 0.199 | Contact Map | 0.673 |
| 2zvrA | 2 | 0.9504 | 100 | 0.202 | Contact Map | 0.766 |
Sequence Conservation (Image Generated using WebLogo v3)