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CSPA - DPPB
UniProt: P0A9X9 - P0AEF8
Length: 409
Sequences: 238
Seq/Len: 0.61
I_Prob: 0.00

CSPA - Cold shock protein CspA
Paralog alert: 0.78 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: CSPA CSPB CSPC CSPD CSPE CSPF CSPG CSPH CSPI
DPPB - Dipeptide transport system permease protein DppB
Paralog alert: 0.81 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfF:GContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
55_I 121_A 1.26 0.00
38_Q 242_A 1.19 0.00
25_D 95_R 1.16 0.00
27_S 155_L 1.14 0.00
24_D 283_T 1.13 0.00
18_F 206_I 1.10 0.00
24_D 102_L 1.05 0.00
60_K 335_I 1.04 0.00
66_N 99_T 1.00 0.00
59_A 92_F 0.98 0.00
54_T 108_I 0.98 0.00
67_V 327_L 0.98 0.00
42_Y 18_G 0.98 0.00
44_S 143_M 0.98 0.00
60_K 245_L 0.96 0.00
48_G 61_P 0.92 0.00
26_G 254_H 0.91 0.00
24_D 50_A 0.89 0.00
62_P 326_L 0.88 0.00
57_S 105_C 0.85 0.00
36_A 305_V 0.82 0.00
24_D 326_L 0.82 0.00
18_F 251_I 0.82 0.00
55_I 254_H 0.82 0.00
46_D 50_A 0.82 0.00
52_S 163_T 0.81 0.00
38_Q 58_L 0.81 0.00
27_S 3_Q 0.80 0.00
48_G 62_M 0.80 0.00
53_F 31_P 0.80 0.00
13_N 10_G 0.79 0.00
36_A 212_L 0.78 0.00
49_Q 164_P 0.78 0.00
63_A 235_D 0.78 0.00
54_T 163_T 0.78 0.00
27_S 135_G 0.78 0.00
52_S 239_T 0.77 0.00
44_S 202_V 0.77 0.00
57_S 77_D 0.77 0.00
30_V 99_T 0.76 0.00
56_E 115_I 0.76 0.00
53_F 278_A 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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