May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
PHOU - PSTC
UniProt: P0A9K7 - P0AGH8
Length: 560
Sequences: 1064
Seq/Len: 2.07
I_Prob: 0.00
PHOU - Phosphate-specific transport system accessory protein PhoU
Paralog alert: 0.54 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: PHOU 		PSTC - Phosphate transport system permease protein PstC
Paralog alert: 0.92 [within 20: 0.69] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfG:FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
156_R 79_L 0.98 0.00
133_R 83_F 0.94 0.00
82_T 78_T 0.92 0.00
56_E 92_V 0.92 0.00
132_G 81_T 0.88 0.00
210_C 172_A 0.87 0.00
128_L 116_I 0.82 0.00
49_D 105_P 0.81 0.00
14_F 293_I 0.80 0.00
39_A 238_A 0.79 0.00
163_K 72_L 0.79 0.00
105_V 86_L 0.78 0.00
220_Q 18_I 0.77 0.00
166_Q 311_R 0.76 0.00
131_L 71_A 0.76 0.00
70_E 239_L 0.76 0.00
176_M 92_V 0.75 0.00
103_G 201_K 0.74 0.00
153_E 108_L 0.74 0.00
193_L 83_F 0.74 0.00
146_F 75_I 0.73 0.00
151_I 29_I 0.73 0.00
202_I 293_I 0.73 0.00
21_I 133_F 0.73 0.00
132_G 18_I 0.72 0.00
70_E 296_V 0.72 0.00
213_I 26_A 0.72 0.00
76_I 185_I 0.71 0.00
75_I 196_T 0.71 0.00
27_T 175_V 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3119 seconds.