| UniProt: | Q47539 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13301 | ||
| Length: | 275 (244) | ||
| Sequences: | 4655 | ||
| Seq/Len: | 19.08 |
| TAUC
Paralog alert: 0.65 [within 20: 0.13] - ratio of genomes with paralogs Cluster includes: ARTM ARTQ GLNP GLTJ GLTK HISM HISQ METI PHNE SSUC TAUC YECS YEHW |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 39_W | 43_T | 4.318 | 1.00 | |
| 39_W | 56_Q | 3.106 | 1.00 | |
| 112_R | 166_K | 2.985 | 1.00 | |
| 176_A | 190_V | 2.91 | 1.00 | |
| 62_L | 244_A | 2.866 | 1.00 | |
| 182_S | 185_Q | 2.634 | 1.00 | |
| 134_M | 147_L | 2.627 | 1.00 | |
| 184_A | 188_W | 2.542 | 1.00 | |
| 93_A | 150_Y | 2.498 | 1.00 | |
| 86_R | 142_E | 2.399 | 1.00 | |
| 81_A | 85_T | 2.384 | 1.00 | |
| 69_Q | 75_T | 2.329 | 1.00 | |
| 83_S | 214_L | 2.281 | 1.00 | |
| 85_T | 89_L | 2.269 | 1.00 | |
| 164_G | 198_E | 2.24 | 1.00 | |
| 238_A | 241_V | 2.212 | 1.00 | |
| 138_F | 147_L | 2.107 | 1.00 | |
| 230_V | 245_G | 2.075 | 1.00 | |
| 59_L | 63_L | 2.005 | 1.00 | |
| 95_V | 203_L | 1.948 | 1.00 | |
| 94_A | 153_I | 1.94 | 1.00 | |
| 102_G | 106_G | 1.94 | 1.00 | |
| 79_H | 229_M | 1.913 | 1.00 | |
| 97_F | 154_F | 1.91 | 1.00 | |
| 97_F | 150_Y | 1.884 | 1.00 | |
| 41_V | 46_L | 1.863 | 1.00 | |
| 161_A | 199_I | 1.806 | 1.00 | |
| 109_P | 112_R | 1.806 | 1.00 | |
| 154_F | 158_A | 1.788 | 1.00 | |
| 105_M | 158_A | 1.758 | 1.00 | |
| 97_F | 100_P | 1.756 | 1.00 | |
| 157_V | 206_G | 1.745 | 1.00 | |
| 266_R | 269_P | 1.732 | 1.00 | |
| 94_A | 150_Y | 1.711 | 1.00 | |
| 63_L | 68_P | 1.686 | 1.00 | |
| 89_L | 146_I | 1.669 | 1.00 | |
| 195_A | 199_I | 1.652 | 1.00 | |
| 233_A | 241_V | 1.645 | 1.00 | |
| 176_A | 181_A | 1.637 | 1.00 | |
| 183_R | 186_V | 1.624 | 1.00 | |
| 66_A | 77_W | 1.62 | 1.00 | |
| 259_G | 263_L | 1.61 | 1.00 | |
| 102_G | 165_V | 1.602 | 1.00 | |
| 57_Q | 60_E | 1.589 | 1.00 | |
| 262_A | 266_R | 1.579 | 1.00 | |
| 262_A | 265_R | 1.562 | 1.00 | |
| 60_E | 64_T | 1.557 | 1.00 | |
| 109_P | 113_G | 1.553 | 1.00 | |
| 185_Q | 189_F | 1.544 | 1.00 | |
| 143_T | 147_L | 1.53 | 1.00 | |
| 165_V | 191_I | 1.499 | 1.00 | |
| 56_Q | 60_E | 1.475 | 1.00 | |
| 111_V | 115_L | 1.454 | 1.00 | |
| 168_V | 194_G | 1.43 | 1.00 | |
| 173_I | 186_V | 1.428 | 1.00 | |
| 229_M | 245_G | 1.417 | 1.00 | |
| 258_L | 262_A | 1.409 | 1.00 | |
| 42_A | 54_P | 1.408 | 1.00 | |
| 40_T | 44_L | 1.4 | 0.99 | |
| 98_G | 157_V | 1.354 | 0.99 | |
| 98_G | 158_A | 1.347 | 0.99 | |
| 54_P | 57_Q | 1.344 | 0.99 | |
| 204_R | 264_Q | 1.327 | 0.99 | |
| 175_A | 179_L | 1.322 | 0.99 | |
| 96_L | 100_P | 1.319 | 0.99 | |
| 108_S | 111_V | 1.319 | 0.99 | |
| 105_M | 162_L | 1.313 | 0.99 | |
| 61_K | 238_A | 1.311 | 0.99 | |
| 82_A | 86_R | 1.302 | 0.99 | |
| 36_T | 40_T | 1.298 | 0.99 | |
| 82_A | 224_R | 1.281 | 0.99 | |
| 134_M | 144_S | 1.264 | 0.99 | |
| 91_L | 203_L | 1.261 | 0.99 | |
| 101_V | 154_F | 1.252 | 0.99 | |
| 164_G | 202_G | 1.234 | 0.98 | |
| 106_G | 165_V | 1.234 | 0.98 | |
| 134_M | 138_F | 1.232 | 0.98 | |
| 174_R | 177_Q | 1.223 | 0.98 | |
| 43_T | 56_Q | 1.215 | 0.98 | |
| 171_V | 174_R | 1.215 | 0.98 | |
| 63_L | 66_A | 1.214 | 0.98 | |
| 231_Q | 234_G | 1.214 | 0.98 | |
| 80_L | 252_I | 1.211 | 0.98 | |
| 134_M | 151_L | 1.195 | 0.98 | |
| 133_L | 137_W | 1.184 | 0.98 | |
| 49_P | 57_Q | 1.184 | 0.98 | |
| 105_M | 111_V | 1.184 | 0.98 | |
| 91_L | 95_V | 1.177 | 0.98 | |
| 177_Q | 186_V | 1.164 | 0.97 | |
| 61_K | 64_T | 1.163 | 0.97 | |
| 77_W | 81_A | 1.16 | 0.97 | |
| 185_Q | 188_W | 1.155 | 0.97 | |
| 255_L | 259_G | 1.144 | 0.97 | |
| 39_W | 54_P | 1.138 | 0.97 | |
| 90_A | 149_I | 1.136 | 0.97 | |
| 152_A | 213_T | 1.135 | 0.97 | |
| 94_A | 157_V | 1.132 | 0.97 | |
| 175_A | 180_G | 1.129 | 0.97 | |
| 78_Q | 224_R | 1.124 | 0.97 | |
| 99_I | 199_I | 1.123 | 0.97 | |
| 101_V | 158_A | 1.121 | 0.97 | |
| 128_L | 216_A | 1.12 | 0.96 | |
| 107_L | 183_R | 1.114 | 0.96 | |
| 84_L | 252_I | 1.113 | 0.96 | |
| 80_L | 226_L | 1.111 | 0.96 | |
| 84_L | 88_M | 1.111 | 0.96 | |
| 120_E | 123_R | 1.102 | 0.96 | |
| 95_V | 99_I | 1.1 | 0.96 | |
| 107_L | 110_T | 1.097 | 0.96 | |
| 61_K | 240_D | 1.095 | 0.96 | |
| 263_L | 267_L | 1.094 | 0.96 | |
| 88_M | 92_F | 1.093 | 0.96 | |
| 215_V | 249_I | 1.092 | 0.96 | |
| 181_A | 185_Q | 1.085 | 0.96 | |
| 62_L | 248_V | 1.08 | 0.95 | |
| 87_I | 214_L | 1.076 | 0.95 | |
| 169_Q | 172_R | 1.055 | 0.95 | |
| 160_S | 201_T | 1.055 | 0.95 | |
| 104_A | 111_V | 1.055 | 0.95 | |
| 98_G | 161_A | 1.054 | 0.95 | |
| 202_G | 206_G | 1.04 | 0.94 | |
| 258_L | 261_R | 1.036 | 0.94 | |
| 226_L | 245_G | 1.034 | 0.94 | |
| 181_A | 186_V | 1.025 | 0.93 | |
| 207_L | 256_L | 1.021 | 0.93 | |
| 170_Q | 174_R | 1.013 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3d31C | 2 | 0.96 | 99.9 | 0.608 | Contact Map | 0.585 |
| 2onkC | 4 | 0.9564 | 99.9 | 0.627 | Contact Map | 0.64 |
| 3rlfF | 1 | 0.9745 | 99.9 | 0.635 | Contact Map | 0.661 |
| 3tuiA | 4 | 0.7345 | 99.9 | 0.647 | Contact Map | 0.752 |
| 3rlfG | 1 | 0.9564 | 99.8 | 0.68 | Contact Map | 0.542 |
| 2mc7A | 1 | 0.1018 | 5 | 0.965 | Contact Map | 0 |
| 3tdsE | 5 | 0.3709 | 3 | 0.969 | Contact Map | 0.378 |
| 3fymA | 1 | 0.1636 | 1.9 | 0.972 | Contact Map | |
| 2kv5A | 1 | 0.12 | 1.9 | 0.972 | Contact Map | 0.322 |
| 3arcK | 2 | 0.1309 | 1.8 | 0.972 | Contact Map | 0.291 |
Sequence Conservation (Image Generated using WebLogo v3)